RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SASH1O94885 1247 aa18.52■□□□□ 0.55
HMGA1-202ENST00000347617 IFIT2P09913 472 aaKnown RBP18.52■□□□□ 0.55
HMGA1-202ENST00000347617 SKILP12757 684 aa18.52■□□□□ 0.55
HMGA1-202ENST00000347617 HSPA1LP34931 641 aa18.52■□□□□ 0.55
HMGA1-202ENST00000347617 PTPN12Q05209 780 aaKnown RBP18.52■□□□□ 0.55
HMGA1-202ENST00000347617 CCDC144BQ3MJ40 725 aa18.52■□□□□ 0.55
HMGA1-202ENST00000347617 CCDC144CPQ8IYA2 1237 aa18.52■□□□□ 0.55
HMGA1-202ENST00000347617 CCAR2Q8N163 923 aaKnown RBP18.52■□□□□ 0.55
HMGA1-202ENST00000347617 NAT10Q9H0A0 1025 aaKnown RBP18.52■□□□□ 0.55
HMGA1-202ENST00000347617 ZNF215Q9UL58 517 aaPredicted RBP18.52■□□□□ 0.55
HMGA1-202ENST00000347617 PA2G4Q9UQ80 394 aaKnown RBP18.52■□□□□ 0.55
HMGA1-202ENST00000347617 CCP110O43303 1012 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 FERMT3Q86UX7 667 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 CHMP4CQ96CF2 233 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 CCDC87Q9NVE4 849 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 FBXO3Q9UK99 471 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 ZBTB1Q9Y2K1 713 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 CDHR2Q9BYE9 1310 aa18.51■□□□□ 0.55
HMGA1-202ENST00000347617 BECN2A8MW95 431 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 RGL2O15211 777 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 NR1I2O75469 434 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 ATP6V1AP38606 617 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 RESTQ13127 1097 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 INTS5Q6P9B9 1019 aaKnown RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 ZBTB38Q8NAP3 1195 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 CCDC150Q8NCX0 1101 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 FBXO41Q8TF61 875 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 ZNF592Q92610 1267 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 ACSBG1Q96GR2 724 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 PGBD1Q96JS3 809 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 GJD4Q96KN9 370 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 OSBPL5Q9H0X9 879 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 L2HGDHQ9H9P8 463 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 PALLDQ8WX93 1383 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 PSDA5PKW4 1024 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 CCDC69A6NI79 296 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 LMBR1LQ6UX01 489 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 BBXQ8WY36 941 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 LLPHQ9BRT6 129 aaKnown RBP18.5■□□□□ 0.55
HMGA1-202ENST00000347617 CHMP3Q9Y3E7 222 aa18.5■□□□□ 0.55
HMGA1-202ENST00000347617 RFX7Q2KHR2 1363 aa18.49■□□□□ 0.55
HMGA1-202ENST00000347617 CCZ1BP86790 482 aa18.49■□□□□ 0.55
HMGA1-202ENST00000347617 CCZ1P86791 482 aaPredicted RBP18.49■□□□□ 0.55
HMGA1-202ENST00000347617 CEP57L1Q8IYX8 460 aa18.49■□□□□ 0.55
HMGA1-202ENST00000347617 TMEM51Q9NW97 253 aa18.49■□□□□ 0.55
HMGA1-202ENST00000347617 MED23Q9ULK4 1368 aa18.48■□□□□ 0.55
HMGA1-202ENST00000347617 ATP8B1O43520 1251 aa18.48■□□□□ 0.55
HMGA1-202ENST00000347617 H2AFXP16104 143 aaPredicted RBP18.48■□□□□ 0.55
HMGA1-202ENST00000347617 MEX3CQ5U5Q3 659 aaKnown RBP18.48■□□□□ 0.55
HMGA1-202ENST00000347617 CCDC73Q6ZRK6 1079 aa18.48■□□□□ 0.55
HMGA1-202ENST00000347617 GPR108Q9NPR9 543 aa18.48■□□□□ 0.55
HMGA1-202ENST00000347617 ATRNO75882 1429 aa18.48■□□□□ 0.55
HMGA1-202ENST00000347617 IGSF3O75054 1194 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 CDK11BP21127 795 aaKnown RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 CRKLP46109 303 aaKnown RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 NAA16Q6N069 864 aaPredicted RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 FBXO38Q6PIJ6 1188 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 DZIP3Q86Y13 1208 aaKnown RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 GTF3C6Q969F1 213 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 ARGLU1Q9NWB6 273 aaPredicted RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 TFIP11Q9UBB9 837 aaKnown RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 RCOR1Q9UKL0 485 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 TRPC5Q9UL62 973 aaPredicted RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 CIAO1O76071 339 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 CSF1RP07333 972 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 TPM1P09493 284 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 TOB2Q14106 344 aaPredicted RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 FILIP1Q7Z7B0 1213 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 NLRP10Q86W26 655 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 AK7Q96M32 723 aa18.47■□□□□ 0.55
HMGA1-202ENST00000347617 DNAJC2Q99543 621 aaKnown RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 SRRTQ9BXP5 876 aaKnown RBP18.47■□□□□ 0.55
HMGA1-202ENST00000347617 H3BQV1 296 aa18.46■□□□□ 0.55
HMGA1-202ENST00000347617 GTF2E1P29083 439 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-202ENST00000347617 NMIQ13287 307 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-202ENST00000347617 SNW1Q13573 536 aaKnown RBP18.46■□□□□ 0.55
HMGA1-202ENST00000347617 IFFO2Q5TF58 517 aa18.46■□□□□ 0.55
HMGA1-202ENST00000347617 ZNF34Q8IZ26 560 aa18.46■□□□□ 0.55
HMGA1-202ENST00000347617 EAF2Q96CJ1 260 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-202ENST00000347617 ZNF396Q96N95 335 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-202ENST00000347617 BPIFA3Q9BQP9 254 aa18.46■□□□□ 0.55
HMGA1-202ENST00000347617 NOL10Q9BSC4 688 aaKnown RBP18.46■□□□□ 0.55
HMGA1-202ENST00000347617 ANKRD36CQ5JPF3 1778 aa18.46■□□□□ 0.55
HMGA1-202ENST00000347617 KCNQ2O43526 872 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 KINO60870 393 aaKnown RBP18.45■□□□□ 0.54
HMGA1-202ENST00000347617 ITPK1Q13572 414 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 NAA30Q147X3 362 aaPredicted RBP18.45■□□□□ 0.54
HMGA1-202ENST00000347617 ELF2Q15723 593 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 HLFQ16534 295 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 TEX35Q5T0J7 233 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 USPL1Q5W0Q7 1092 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 AACSQ86V21 672 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 ZNF330Q9Y3S2 320 aaPredicted RBP18.45■□□□□ 0.54
HMGA1-202ENST00000347617 AFF2P51816 1311 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 IL15P40933 162 aaPredicted RBP18.45■□□□□ 0.54
HMGA1-202ENST00000347617 TPM4P67936 248 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 FAM173BQ6P4H8 233 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 TICAM2Q86XR7 235 aa18.45■□□□□ 0.54
HMGA1-202ENST00000347617 FAM160A1Q05DH4 1040 aa18.44■□□□□ 0.54
HMGA1-202ENST00000347617 RC3H1Q5TC82 1133 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms