RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RNF41Q9H4P4 317 aaPredicted RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 KCNK9Q9NPC2 374 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 HECW1Q76N89 1606 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 NOS1P29475 1434 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 CYP7A1P22680 504 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 MXRA7P84157 204 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 NBPF11Q86T75 865 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 RAB34Q9BZG1 259 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 SNX14Q9Y5W7 946 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 TRIM75PA6NK02 468 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 ANKRD65E5RJM6 399 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 TACC1O75410 805 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 OAS2P29728 719 aaKnown RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 MTX1Q13505 466 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 IFIT1BQ5T764 474 aaKnown RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 IGSF22Q8N9C0 903 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 PHKBQ93100 1093 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 PYCARDQ9ULZ3 195 aa9.85□□□□□ -0.83
RTN3-202ENST00000339997 LUC7L2Q9Y383 392 aaKnown RBP9.85□□□□□ -0.83
RTN3-202ENST00000339997 KRT86O43790 486 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PIP4K2BP78356 416 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PLCB3Q01970 1234 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 UTP14CQ5TAP6 766 aaKnown RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 CEP63Q96MT8 703 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PAG1Q9NWQ8 432 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 WDR62O43379 1518 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PARD3Q8TEW0 1356 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PSMA7O14818 248 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 MYCNP04198 464 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 ZNF445P59923 1031 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 FANCCQ00597 558 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 MYL5Q02045 173 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 GOLGA8FQ08AF8 430 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 GOLGA8DPQ0D2H9 430 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PICALMQ13492 652 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 APBB1IPQ7Z5R6 666 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.84□□□□□ -0.833e-6■■■□□ 16.3
RTN3-202ENST00000339997 PLEKHH2Q8IVE3 1493 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 COBLO75128 1261 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 ATP2B3Q16720 1220 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 TTC19Q6DKK2 380 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 UBLCP1Q8WVY7 318 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 SYNJ2O15056 1496 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PIK3R4Q99570 1358 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 POLR2DO15514 142 aaKnown RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 NBPF7P0C2Y1 421 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 GBP6Q6ZN66 633 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 DHX32Q7L7V1 743 aaKnown RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 PNMA8AQ86V59 439 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 NFATC2IPQ8NCF5 419 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 FAM76AQ8TAV0 307 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 LEO1Q8WVC0 666 aaPredicted RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 INTS4Q96HW7 963 aaKnown RBP9.84□□□□□ -0.83
RTN3-202ENST00000339997 PPP1R12CQ9BZL4 782 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 PHF8Q9UPP1 1060 aa9.84□□□□□ -0.83
RTN3-202ENST00000339997 CEP170Q5SW79 1584 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 KIF4AO95239 1232 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 ZBTB16Q05516 673 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 ZNF827Q17R98 1081 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 BEND3Q5T5X7 828 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 CFAP58Q5T655 872 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 KANK3Q6NY19 840 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 B4E1Z4 1266 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 PPP1R14CQ8TAE6 165 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 CABLES1Q8TDN4 633 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 PHF23Q9BUL5 403 aaPredicted RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 TAOK3Q9H2K8 898 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 BICC1Q9H694 974 aaKnown RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 EPRSP07814 1512 aaKnown RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 NR1I2O75469 434 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 CKAP4Q07065 602 aaKnown RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 RAD51AP2Q09MP3 1159 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 RAPGEF1Q13905 1077 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 DPH6Q7L8W6 267 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 SLF1Q9BQI6 1058 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 XPO4Q9C0E2 1151 aaKnown RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 KIF20AO95235 890 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 VIMP08670 466 aaKnown RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 CMTR1Q8N1G2 835 aaKnown RBP9.83□□□□□ -0.84
RTN3-202ENST00000339997 DBNDD2Q9BQY9 259 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 NFE2L3Q9Y4A8 694 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 PLB1Q6P1J6 1458 aa9.83□□□□□ -0.84
RTN3-202ENST00000339997 MSH6P52701 1360 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 GSPT1P15170 499 aaKnown RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 VAV2P52735 878 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 AMPD3Q01432 767 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 TTF1Q15361 905 aaPredicted RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 HDXQ7Z353 690 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 ZNF594Q96JF6 807 aaPredicted RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 MRVI1Q9Y6F6 885 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 AKR1B15C9JRZ8 316 aaPredicted RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 POTEJP0CG39 1038 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 C14orf93Q9H972 538 aaKnown RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 EHBP1L1Q8N3D4 1523 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 DHX29Q7Z478 1369 aaKnown RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 CCDC155Q8N6L0 562 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 TACO1Q9BSH4 297 aaKnown RBP9.82□□□□□ -0.84
RTN3-202ENST00000339997 AMOTQ4VCS5 1084 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 CTAGE1Q96RT6 745 aa9.82□□□□□ -0.84
RTN3-202ENST00000339997 IL16Q14005 1332 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms