RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TMEM88BA6NKF7 163 aa19.67■□□□□ 0.74
CLN3-201ENST00000333496 IFIT1P09914 478 aaKnown RBP19.67■□□□□ 0.74
CLN3-201ENST00000333496 FKBP1AP62942 108 aaKnown RBP19.67■□□□□ 0.74
CLN3-201ENST00000333496 DLK2Q6UY11 383 aa19.67■□□□□ 0.74
CLN3-201ENST00000333496 CDC37L1Q7L3B6 337 aa19.67■□□□□ 0.74
CLN3-201ENST00000333496 LPIN2Q92539 896 aa19.67■□□□□ 0.74
CLN3-201ENST00000333496 GTF3C3Q9Y5Q9 886 aa19.67■□□□□ 0.74
CLN3-201ENST00000333496 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.67■□□□□ 0.74
CLN3-201ENST00000333496 MS4A1P11836 297 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 ATP8B2P98198 1209 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 SCARF1Q14162 830 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 POLA2Q14181 598 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 CAVIN4Q5BKX8 364 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 CST9Q5W186 159 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 OGFOD1Q8N543 542 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 KLRG1Q96E93 195 aa19.66■□□□□ 0.74
CLN3-201ENST00000333496 SLC5A1P13866 664 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 ATP2B3Q16720 1220 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 NBPF9Q3BBW0 867 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 USP48Q86UV5 1035 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 VPS37DQ86XT2 251 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 SSH3Q8TE77 659 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 GGA3Q9NZ52 723 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 WNT10BO00744 389 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 MMP14P50281 582 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 MVPQ14764 893 aaKnown RBP19.65■□□□□ 0.74
CLN3-201ENST00000333496 COG6Q9Y2V7 657 aa19.65■□□□□ 0.74
CLN3-201ENST00000333496 ANGEL2Q5VTE6 544 aaKnown RBP19.64■□□□□ 0.73
CLN3-201ENST00000333496 KRT26Q7Z3Y9 468 aa19.64■□□□□ 0.73
CLN3-201ENST00000333496 DCPSQ96C86 337 aaKnown RBP19.64■□□□□ 0.73
CLN3-201ENST00000333496 ZBED3Q96IU2 234 aaPredicted RBP19.64■□□□□ 0.73
CLN3-201ENST00000333496 ADM5C9JUS6 153 aa19.63■□□□□ 0.73
CLN3-201ENST00000333496 F8W031 263 aaPredicted RBP19.63■□□□□ 0.73
CLN3-201ENST00000333496 TFCP2Q12800 502 aa19.63■□□□□ 0.73
CLN3-201ENST00000333496 MFSD14BQ5SR56 506 aa19.63■□□□□ 0.73
CLN3-201ENST00000333496 C20orf194Q5TEA3 1177 aa19.63■□□□□ 0.73
CLN3-201ENST00000333496 HDAC9Q9UKV0 1011 aa19.63■□□□□ 0.73
CLN3-201ENST00000333496 TIMM10P62072 90 aa19.62■□□□□ 0.73
CLN3-201ENST00000333496 GRIK5Q16478 980 aa19.62■□□□□ 0.73
CLN3-201ENST00000333496 PCDHAC2Q9Y5I4 1007 aa19.62■□□□□ 0.73
CLN3-201ENST00000333496 ADORA1P30542 326 aa19.62■□□□□ 0.73
CLN3-201ENST00000333496 CEP85Q6P2H3 762 aa19.62■□□□□ 0.73
CLN3-201ENST00000333496 MKRN1Q9UHC7 482 aaKnown RBP19.62■□□□□ 0.73
CLN3-201ENST00000333496 SCAF8Q9UPN6 1271 aaKnown RBP19.62■□□□□ 0.73
CLN3-201ENST00000333496 COL1A1P02452 1464 aaPredicted RBP19.61■□□□□ 0.73
CLN3-201ENST00000333496 FRAT2O75474 233 aaPredicted RBP19.61■□□□□ 0.73
CLN3-201ENST00000333496 CELF2O95319 508 aaKnown RBP19.61■□□□□ 0.73
CLN3-201ENST00000333496 CNTNAP1P78357 1384 aa19.61■□□□□ 0.73
CLN3-201ENST00000333496 CHAF1AQ13111 956 aaPredicted RBP19.61■□□□□ 0.73
CLN3-201ENST00000333496 PITPNM2Q9BZ72 1349 aa19.61■□□□□ 0.73
CLN3-201ENST00000333496 DDX19BQ9UMR2 479 aa19.61■□□□□ 0.73
CLN3-201ENST00000333496 A0A1B0GUL7 405 aa19.6■□□□□ 0.73
CLN3-201ENST00000333496 PHKA1P46020 1223 aa19.6■□□□□ 0.73
CLN3-201ENST00000333496 G3BP1Q13283 466 aaKnown RBP eCLIP19.6■□□□□ 0.73
CLN3-201ENST00000333496 PDE3AQ14432 1141 aa19.6■□□□□ 0.73
CLN3-201ENST00000333496 SULF1Q8IWU6 871 aa19.6■□□□□ 0.73
CLN3-201ENST00000333496 MTMR14Q8NCE2 650 aa19.6■□□□□ 0.73
CLN3-201ENST00000333496 ZBTB40Q9NUA8 1239 aa19.6■□□□□ 0.73
CLN3-201ENST00000333496 JMYQ8N9B5 988 aa19.59■□□□□ 0.73
CLN3-201ENST00000333496 ZNF408Q9H9D4 720 aa19.59■□□□□ 0.73
CLN3-201ENST00000333496 AOX1Q06278 1338 aa19.58■□□□□ 0.73
CLN3-201ENST00000333496 RASSF10A6NK89 507 aa19.58■□□□□ 0.73
CLN3-201ENST00000333496 DLGAP5Q15398 846 aa19.58■□□□□ 0.73
CLN3-201ENST00000333496 CFAP100Q494V2 611 aa19.58■□□□□ 0.73
CLN3-201ENST00000333496 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.58■□□□□ 0.73
CLN3-201ENST00000333496 PRMT6Q96LA8 375 aaPredicted RBP19.58■□□□□ 0.73
CLN3-201ENST00000333496 ABT1Q9ULW3 272 aaKnown RBP19.58■□□□□ 0.73
CLN3-201ENST00000333496 TTF2Q9UNY4 1162 aaKnown RBP19.58■□□□□ 0.73
CLN3-201ENST00000333496 AKAP2Q9Y2D5 859 aa19.58■□□□□ 0.73
CLN3-201ENST00000333496 SURF6O75683 361 aaKnown RBP19.58■□□□□ 0.72
CLN3-201ENST00000333496 CCDC102BQ68D86 513 aa19.58■□□□□ 0.72
CLN3-201ENST00000333496 TBC1D22AQ8WUA7 517 aa19.58■□□□□ 0.72
CLN3-201ENST00000333496 XAGE2Q96GT9 111 aa19.58■□□□□ 0.72
CLN3-201ENST00000333496 NOP58Q9Y2X3 529 aaKnown RBP19.58■□□□□ 0.72
CLN3-201ENST00000333496 TLL2Q9Y6L7 1015 aa19.58■□□□□ 0.72
CLN3-201ENST00000333496 DEFB115Q30KQ5 88 aa19.57■□□□□ 0.72
CLN3-201ENST00000333496 SPDYE2BA6NHP3 402 aa19.56■□□□□ 0.72
CLN3-201ENST00000333496 SPDYE6P0CI01 402 aa19.56■□□□□ 0.72
CLN3-201ENST00000333496 SAPCD2Q86UD0 394 aa19.56■□□□□ 0.72
CLN3-201ENST00000333496 CDCA5Q96FF9 252 aa19.56■□□□□ 0.72
CLN3-201ENST00000333496 ZBTB22O15209 634 aa19.55■□□□□ 0.72
CLN3-201ENST00000333496 VEGFBP49765 207 aa19.55■□□□□ 0.72
CLN3-201ENST00000333496 NEUROD6Q96NK8 337 aa19.55■□□□□ 0.72
CLN3-201ENST00000333496 GNL3LQ9NVN8 582 aaKnown RBP19.55■□□□□ 0.72
CLN3-201ENST00000333496 SERPINA10Q9UK55 444 aa19.55■□□□□ 0.72
CLN3-201ENST00000333496 PRAMEF18Q5VWM3 479 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 SIRT2Q8IXJ6 389 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 WDR66Q8TBY9 1149 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 AKAP11Q9UKA4 1901 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 CRKP46108 304 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 RBM5P52756 815 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-201ENST00000333496 GPR108Q9NPR9 543 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 DENND2AQ9ULE3 1009 aa19.54■□□□□ 0.72
CLN3-201ENST00000333496 MYH2Q9UKX2 1941 aa19.53■□□□□ 0.72
CLN3-201ENST00000333496 SEMA3EO15041 775 aa19.53■□□□□ 0.72
CLN3-201ENST00000333496 OS9Q13438 667 aaPredicted RBP19.53■□□□□ 0.72
CLN3-201ENST00000333496 RASGRF1Q13972 1273 aa19.53■□□□□ 0.72
CLN3-201ENST00000333496 APOBEC3FQ8IUX4 373 aaKnown RBP19.53■□□□□ 0.72
CLN3-201ENST00000333496 RPAP2Q8IXW5 612 aaPredicted RBP19.53■□□□□ 0.72
CLN3-201ENST00000333496 SUGT1Q9Y2Z0 365 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms