RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PGAP2Q9UHJ9 254 aa17.35■□□□□ 0.37
LIMS1-201ENST00000332345 SURF6O75683 361 aaKnown RBP17.34■□□□□ 0.37
LIMS1-201ENST00000332345 HIRAP54198 1017 aaPredicted RBP17.34■□□□□ 0.37
LIMS1-201ENST00000332345 C20orf194Q5TEA3 1177 aa17.34■□□□□ 0.37
LIMS1-201ENST00000332345 FAM205AQ6ZU69 1335 aa17.34■□□□□ 0.37
LIMS1-201ENST00000332345 RPAP2Q8IXW5 612 aaPredicted RBP17.34■□□□□ 0.37
LIMS1-201ENST00000332345 TRPM4Q8TD43 1214 aa17.34■□□□□ 0.37
LIMS1-201ENST00000332345 HDAC9Q9UKV0 1011 aa17.34■□□□□ 0.37
LIMS1-201ENST00000332345 ITGBL1O95965 494 aaPredicted RBP17.33■□□□□ 0.36
LIMS1-201ENST00000332345 TFCP2Q12800 502 aa17.33■□□□□ 0.36
LIMS1-201ENST00000332345 OS9Q13438 667 aaPredicted RBP17.33■□□□□ 0.36
LIMS1-201ENST00000332345 KIF4BQ2VIQ3 1234 aa17.33■□□□□ 0.36
LIMS1-201ENST00000332345 CEP85Q6P2H3 762 aa17.33■□□□□ 0.36
LIMS1-201ENST00000332345 MYOZ2Q9NPC6 264 aa17.33■□□□□ 0.36
LIMS1-201ENST00000332345 GNL3LQ9NVN8 582 aaKnown RBP17.33■□□□□ 0.36
LIMS1-201ENST00000332345 ADAMTSL1Q8N6G6 1762 aa17.33■□□□□ 0.36
LIMS1-201ENST00000332345 TIMM10P62072 90 aa17.32■□□□□ 0.36
LIMS1-201ENST00000332345 KIAA0825Q8IV33 1275 aa17.32■□□□□ 0.36
LIMS1-201ENST00000332345 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
LIMS1-201ENST00000332345 HMMRO75330 724 aa17.31■□□□□ 0.36
LIMS1-201ENST00000332345 EGFRP00533 1210 aa17.31■□□□□ 0.36
LIMS1-201ENST00000332345 RRP1P56182 461 aaKnown RBP17.31■□□□□ 0.36
LIMS1-201ENST00000332345 CDC37L1Q7L3B6 337 aa17.31■□□□□ 0.36
LIMS1-201ENST00000332345 TBC1D22AQ8WUA7 517 aa17.31■□□□□ 0.36
LIMS1-201ENST00000332345 DCPSQ96C86 337 aaKnown RBP17.31■□□□□ 0.36
LIMS1-201ENST00000332345 IQSEC3Q9UPP2 1182 aaPredicted RBP17.31■□□□□ 0.36
LIMS1-201ENST00000332345 POLR2AP24928 1970 aaKnown RBP17.3■□□□□ 0.36
LIMS1-201ENST00000332345 SCARF1Q14162 830 aa17.3■□□□□ 0.36
LIMS1-201ENST00000332345 MFSD14BQ5SR56 506 aa17.3■□□□□ 0.36
LIMS1-201ENST00000332345 CERS5Q8N5B7 392 aa17.3■□□□□ 0.36
LIMS1-201ENST00000332345 NEUROD6Q96NK8 337 aa17.3■□□□□ 0.36
LIMS1-201ENST00000332345 JAG2Q9Y219 1238 aa17.3■□□□□ 0.36
LIMS1-201ENST00000332345 PASKQ96RG2 1323 aa17.29■□□□□ 0.36
LIMS1-201ENST00000332345 A0A1B0GUL7 405 aa17.29■□□□□ 0.36
LIMS1-201ENST00000332345 HOXD11P31277 338 aaPredicted RBP17.29■□□□□ 0.36
LIMS1-201ENST00000332345 CHAF1AQ13111 956 aaPredicted RBP17.29■□□□□ 0.36
LIMS1-201ENST00000332345 HSP90AB4PQ58FF6 505 aa17.29■□□□□ 0.36
LIMS1-201ENST00000332345 GORABQ5T7V8 394 aa17.29■□□□□ 0.36
LIMS1-201ENST00000332345 GPR108Q9NPR9 543 aa17.29■□□□□ 0.36
LIMS1-201ENST00000332345 ZNF646O15015 1829 aaPredicted RBP17.28■□□□□ 0.36
LIMS1-201ENST00000332345 F8W031 263 aaPredicted RBP17.28■□□□□ 0.36
LIMS1-201ENST00000332345 SEMA3EO15041 775 aa17.28■□□□□ 0.36
LIMS1-201ENST00000332345 ERC1Q8IUD2 1116 aa17.28■□□□□ 0.36
LIMS1-201ENST00000332345 WDR66Q8TBY9 1149 aa17.28■□□□□ 0.36
LIMS1-201ENST00000332345 XAGE2Q96GT9 111 aa17.28■□□□□ 0.36
LIMS1-201ENST00000332345 ZBTB22O15209 634 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 ADORA1P30542 326 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 DLGAP5Q15398 846 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 CCDC102BQ68D86 513 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 USP48Q86UV5 1035 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 CREBZFQ9NS37 354 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 DENND2AQ9ULE3 1009 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 SUGT1Q9Y2Z0 365 aa17.27■□□□□ 0.36
LIMS1-201ENST00000332345 TMEM88BA6NKF7 163 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 WNT10BO00744 389 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 PHKA1P46020 1223 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 NBPF9Q3BBW0 867 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 KRT26Q7Z3Y9 468 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 SULF1Q8IWU6 871 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 MTMR14Q8NCE2 650 aa17.26■□□□□ 0.35
LIMS1-201ENST00000332345 GLIS2Q9BZE0 524 aaPredicted RBP17.26■□□□□ 0.35
LIMS1-201ENST00000332345 TTF2Q9UNY4 1162 aaKnown RBP17.26■□□□□ 0.35
LIMS1-201ENST00000332345 RBM5P52756 815 aaKnown RBP eCLIP17.25■□□□□ 0.35
LIMS1-201ENST00000332345 TNNI3KQ59H18 835 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 ANGEL2Q5VTE6 544 aaKnown RBP17.25■□□□□ 0.35
LIMS1-201ENST00000332345 SIRT2Q8IXJ6 389 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 MRIQ9BWK5 157 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 GGA3Q9NZ52 723 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 SERPINA10Q9UK55 444 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 EXOC6BQ9Y2D4 811 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.25■□□□□ 0.35
LIMS1-201ENST00000332345 FPGT-TNNI3KV9GXZ4 949 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 MYH13Q9UKX3 1938 aa17.25■□□□□ 0.35
LIMS1-201ENST00000332345 PITPNM2Q9BZ72 1349 aa17.24■□□□□ 0.35
LIMS1-201ENST00000332345 TRAF5O00463 557 aa17.24■□□□□ 0.35
LIMS1-201ENST00000332345 MYO1BO43795 1136 aa17.24■□□□□ 0.35
LIMS1-201ENST00000332345 HDLBPQ00341 1268 aaKnown RBP17.24■□□□□ 0.35
LIMS1-201ENST00000332345 CFAP100Q494V2 611 aa17.24■□□□□ 0.35
LIMS1-201ENST00000332345 TRPM7Q96QT4 1865 aa17.23■□□□□ 0.35
LIMS1-201ENST00000332345 RAB11FIP3O75154 756 aa17.23■□□□□ 0.35
LIMS1-201ENST00000332345 HTRA3P83110 453 aa17.23■□□□□ 0.35
LIMS1-201ENST00000332345 CCDC158Q5M9N0 1113 aa17.23■□□□□ 0.35
LIMS1-201ENST00000332345 ZGPATQ8N5A5 531 aaKnown RBP17.23■□□□□ 0.35
LIMS1-201ENST00000332345 ZBED3Q96IU2 234 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-201ENST00000332345 MAST3O60307 1309 aa17.22■□□□□ 0.35
LIMS1-201ENST00000332345 ASTN2O75129 1339 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-201ENST00000332345 CELF2O95319 508 aaKnown RBP17.22■□□□□ 0.35
LIMS1-201ENST00000332345 UQCRFS1P1P0C7P4 283 aa17.22■□□□□ 0.35
LIMS1-201ENST00000332345 FMR1Q06787 632 aaKnown RBP eCLIP17.22■□□□□ 0.35
LIMS1-201ENST00000332345 DNAJC5GQ8N7S2 189 aa17.22■□□□□ 0.35
LIMS1-201ENST00000332345 PRMT6Q96LA8 375 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-201ENST00000332345 CEP350Q5VT06 3117 aa17.22■□□□□ 0.35
LIMS1-201ENST00000332345 ARAP2Q8WZ64 1704 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 SPDYE2BA6NHP3 402 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 LDHBP07195 334 aaKnown RBP17.21■□□□□ 0.35
LIMS1-201ENST00000332345 SPDYE6P0CI01 402 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 CRKP46108 304 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 CST9Q5W186 159 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 APOBEC3FQ8IUX4 373 aaKnown RBP17.21■□□□□ 0.35
LIMS1-201ENST00000332345 RHPN1Q8TCX5 695 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms