RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TFRCP02786 760 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 SLC3A2P08195 630 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 UBASH3AP57075 661 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 SKIDA1Q1XH10 827 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 ESCO1Q5FWF5 840 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 PRAMEF22A3QJZ6 481 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 MYCNP04198 464 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 APPP05067 770 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 KARSQ15046 597 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 LONRF2Q1L5Z9 754 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 ERC1Q8IUD2 1116 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 DESI2Q9BSY9 194 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 PDE11AQ9HCR9 933 aa15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 GPHNQ9NQX3 736 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 RNF216Q9NWF9 866 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-201ENST00000331194 NRDCO43847 1150 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 NLRP6P59044 892 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 DHX58Q96C10 678 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 ZNF396Q96N95 335 aaPredicted RBP15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 HMG20BQ9P0W2 317 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 PPP2R2CQ9Y2T4 447 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 TBX22Q9Y458 520 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 PXDNLA1KZ92 1463 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 KDRP35968 1356 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 LOC102724159A0A0B4J2E5 919 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 EIF4A1P60842 406 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 PWP2Q15269 919 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 TSGA10IPQ3SY00 556 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 TOGARAM2Q6ZUX3 1019 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 PDILTQ8N807 584 aa15.55■□□□□ 0.08
CCDC88C-201ENST00000331194 PFKFB2O60825 505 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 ZNF202O95125 648 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 STK38Q15208 465 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 NAA16Q6N069 864 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 GOLGA5Q8TBA6 731 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 SNRKQ9NRH2 765 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 A0A0U1RQJ8 604 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 PHACTR2O75167 634 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 ALDH1L1O75891 902 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 MAP3K9P80192 1104 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 AIMP1Q12904 312 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 MTX1Q13505 466 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 ADALQ6DHV7 355 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 GPR161Q8N6U8 529 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 ATRIPQ8WXE1 791 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 MARCKSP29966 332 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 ADKP55263 362 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 NLRP12P59046 1061 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 AK7Q96M32 723 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 ORAI2Q96SN7 254 aa15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 PUF60Q9UHX1 559 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-201ENST00000331194 USPL1Q5W0Q7 1092 aa15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 RSRC2Q7L4I2 434 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 LINC00301Q8NCQ3 95 aa15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 EFCC1Q9HA90 598 aa15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 FDPSP14324 419 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 ACTN2P35609 894 aa15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 GTF2A1P52655 376 aaPredicted RBP15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 DDX46Q7L014 1031 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 PACS2Q86VP3 889 aa15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 SRRTQ9BXP5 876 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-201ENST00000331194 KCNJ6P48051 423 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 TMEM139Q8IV31 216 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 ABTB2Q8N961 1025 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 MRFAP1Q9Y605 127 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 CACNA1FO60840 1977 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 KRT32Q14532 448 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 FANCLQ9NW38 375 aa15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 CWC15Q9P013 229 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-201ENST00000331194 FLT4P35916 1363 aa15.52■□□□□ 0.07
CCDC88C-201ENST00000331194 ATP8B1O43520 1251 aa15.52■□□□□ 0.07
CCDC88C-201ENST00000331194 TOP1P11387 765 aaKnown RBP15.52■□□□□ 0.07
CCDC88C-201ENST00000331194 MTF1Q14872 753 aa15.52■□□□□ 0.07
CCDC88C-201ENST00000331194 EXOC4Q96A65 974 aa15.52■□□□□ 0.07
CCDC88C-201ENST00000331194 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 PRR29P0C7W0 189 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 INTS13Q9NVM9 706 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 AKAP12Q02952 1782 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 PSME1Q06323 249 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 PNOCQ13519 176 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 FAN1Q9Y2M0 1017 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 ITSN1Q15811 1721 aa15.51■□□□□ 0.07
CCDC88C-201ENST00000331194 TPM1P09493 284 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 PFKFB1P16118 471 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 BPIFA3Q9BQP9 254 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 RTEL1Q9NZ71 1219 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 ZNF609O15014 1411 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 SPTLC2O15270 562 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 WDHD1O75717 1129 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 DHX32Q7L7V1 743 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 CCDC12Q8WUD4 166 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 KIFC2Q96AC6 838 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 DRC1Q96MC2 740 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 PNKPQ96T60 521 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 DBNLQ9UJU6 430 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 USP6P35125 1406 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 USP31Q70CQ4 1352 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 MROH7-TTC4A0A0A0MT08 1334 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 PDIA3P30101 505 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 SART3Q15020 963 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms