RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 UBXN1Q04323 297 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 RASA3Q14644 834 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 ODF2LQ9ULJ1 636 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 CAPN7Q9Y6W3 813 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 CPA1P15085 419 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 RTN1Q16799 776 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 MRPS27Q92552 414 aaKnown RBP8.91□□□□□ -0.98
CIITA-201ENST00000324288 STMN4Q9H169 189 aaPredicted RBP8.91□□□□□ -0.98
CIITA-201ENST00000324288 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.91□□□□□ -0.98
CIITA-201ENST00000324288 NEK11Q8NG66 645 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 MICAL1Q8TDZ2 1067 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 CABP5Q9NP86 173 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 TRIM27P14373 513 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 NAPAP54920 295 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 FMNL3Q8IVF7 1028 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 ACSBG1Q96GR2 724 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 TTC14Q96N46 770 aa8.91□□□□□ -0.98
CIITA-201ENST00000324288 SESN3P58005 492 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 IFIT1BQ5T764 474 aaKnown RBP8.9□□□□□ -0.98
CIITA-201ENST00000324288 NCOA7Q8NI08 942 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 BAG2O95816 211 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 BAG3O95817 575 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 ALG1Q9BT22 464 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 ZGPATQ8N5A5 531 aaKnown RBP8.9□□□□□ -0.98
CIITA-201ENST00000324288 BRF1Q92994 677 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 CCDC42Q96M95 316 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 TNNI2P48788 182 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 GKAP1Q5VSY0 366 aaPredicted RBP8.9□□□□□ -0.98
CIITA-201ENST00000324288 VEZTQ9HBM0 779 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 FAM13AO94988 1023 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 SEC24BO95487 1268 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 PEX19P40855 299 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 SIRT1Q96EB6 747 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 NUF2Q9BZD4 464 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 ECHDC1Q9NTX5 307 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 GOLGA6CA6NDK9 693 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 GOLGA6DP0CG33 693 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 GOLGA6AQ9NYA3 693 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 SLC4A4Q9Y6R1 1079 aa8.9□□□□□ -0.98
CIITA-201ENST00000324288 FBLN1P23142 703 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 SMC1BQ8NDV3 1235 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 WHAMMQ8TF30 809 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 NEK1Q96PY6 1258 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 TCHPQ9BT92 498 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 XAB2Q9HCS7 855 aaKnown RBP8.9□□□□□ -0.99
CIITA-201ENST00000324288 CASQ2O14958 399 aaPredicted RBP8.9□□□□□ -0.99
CIITA-201ENST00000324288 PPP2R5CQ13362 524 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 CRCPO75575 148 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 LIG3P49916 1009 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 TRIM7Q9C029 511 aa8.9□□□□□ -0.99
CIITA-201ENST00000324288 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.9□□□□□ -0.99
CIITA-201ENST00000324288 KIF5AQ12840 1032 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 FAM135AQ9P2D6 1515 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CYP7A1P22680 504 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 DCAF17Q5H9S7 520 aaPredicted RBP8.89□□□□□ -0.99
CIITA-201ENST00000324288 RBM26Q5T8P6 1007 aaKnown RBP8.89□□□□□ -0.99
CIITA-201ENST00000324288 FOXO3O43524 673 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 VAV2P52735 878 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 TSNAXIP1Q2TAA8 658 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 RXRAP19793 462 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 LDHAL6AQ6ZMR3 332 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 POLA1P09884 1462 aaPredicted RBP8.89□□□□□ -0.99
CIITA-201ENST00000324288 ZBTB43O43298 467 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 KLHL7Q8IXQ5 586 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CCDC65Q8IXS2 484 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CCT6BQ92526 530 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CLEC11AQ9Y240 323 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 MCM7P33993 719 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 GUCY2FP51841 1108 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CCDC38Q502W7 563 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 TRIM4Q9C037 500 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CASKIN1Q8WXD9 1431 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CHRNA2Q15822 529 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 IFT74Q96LB3 600 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CRNKL1Q9BZJ0 848 aaKnown RBP8.89□□□□□ -0.99
CIITA-201ENST00000324288 HECW1Q76N89 1606 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 ATAD2Q6PL18 1390 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 VPS41P49754 854 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 PPP2R5DQ14738 602 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 CLSTN2Q9H4D0 955 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 RABGAP1Q9Y3P9 1069 aa8.89□□□□□ -0.99
CIITA-201ENST00000324288 RTL1A6NKG5 1358 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 SYNJ2O15056 1496 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 PI4KAP2A4QPH2 592 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 PI4KAP1Q8N8J0 262 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 PSMB7Q99436 277 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 LUC7L2Q9Y383 392 aaKnown RBP8.88□□□□□ -0.99
CIITA-201ENST00000324288 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.88□□□□□ -0.99
CIITA-201ENST00000324288 PRG4Q92954 1404 aaPredicted RBP8.88□□□□□ -0.99
CIITA-201ENST00000324288 KANK3Q6NY19 840 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 RAB3GAP1Q15042 981 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 OPHN1O60890 802 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 CEP128Q6ZU80 1094 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 HAUS7Q99871 368 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 RMND1Q9NWS8 449 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 GEN1Q17RS7 908 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 BAIAP2L1Q9UHR4 511 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 KRT5P13647 590 aa8.88□□□□□ -0.99
CIITA-201ENST00000324288 CDC5LQ99459 802 aaKnown RBP8.88□□□□□ -0.99
CIITA-201ENST00000324288 RFC4P35249 363 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms