RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 U2AF1L5P0DN76 240 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 SFPQP23246 707 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 ATN1P54259 1190 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 U2AF1Q01081 240 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 GABPAQ06546 454 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 SIX5Q8N196 739 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 EXOC6Q8TAG9 804 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 TBC1D31Q96DN5 1066 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CHMP6Q96FZ7 201 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 JAKMIP1Q96N16 626 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 CHMP2BQ9UQN3 213 aa8.58□□□□□ -1.04
LIMCH1-201ENST00000313860 ARHGAP42A6NI28 874 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 YY1P25490 414 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 HPDP32754 393 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 GINS4Q9BRT9 223 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 BMP2KQ9NSY1 1161 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 ZNF76P36508 570 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 CASP2P42575 452 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 MYSM1Q5VVJ2 828 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 TBC1D22AQ8WUA7 517 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 POLR3CQ9BUI4 534 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 DHX57Q6P158 1386 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 PRR23D1E9PI22 279 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 PRR23D2P0DMB1 279 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 SLC44A4Q53GD3 710 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 LRSAM1Q6UWE0 723 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 TEKT4Q8WW24 435 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 DONSONQ9NYP3 566 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 TMOD4Q9NZQ9 345 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 ATAD2Q6PL18 1390 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 LRPAP1P30533 357 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 ECE1P42892 770 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 PPP6R3Q5H9R7 873 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 LUZP2Q86TE4 346 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 ARMC2Q8NEN0 867 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 TTLL11Q8NHH1 800 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 RNF217Q8TC41 542 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 ZFYVE19Q96K21 471 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 SESN1Q9Y6P5 492 aa8.57□□□□□ -1.04
LIMCH1-201ENST00000313860 ARF3P61204 181 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 ARF1P84077 181 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DENND6AQ8IWF6 608 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 ZNF513Q8N8E2 541 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 ORC4O43929 436 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 KIAA1524Q8TCG1 905 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC12Q8WUD4 166 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 TRIM6Q9C030 488 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 ORC6Q9Y5N6 252 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC162PA2VCL2 907 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 SFI1A8K8P3 1242 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 MECOMQ03112 1051 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 CWF19L2Q2TBE0 894 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 RSBN1LQ6PCB5 846 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 PRPF38AQ8NAV1 312 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 AGTPBP1Q9UPW5 1226 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 GOLGA8AA7E2F4 631 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DNAJC6O75061 913 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 EIF2S2P20042 333 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 IRX4P78413 519 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC93Q567U6 631 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 HEATR3Q7Z4Q2 680 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 ARHGAP18Q8N392 663 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 YIPF3Q9GZM5 350 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 LZTFL1Q9NQ48 299 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 A0A1B0GW55 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 GOLGA8IPA6NC78 632 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 STMND1H3BQB6 276 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 RHOXF2BP0C7M4 288 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4L2P0CJ85 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4L3P0CJ86 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4L4P0CJ87 422 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4L5P0CJ88 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4L6P0CJ89 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4L7P0CJ90 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 KRT15P19012 456 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 EEF1B2P24534 225 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 STX1BP61266 288 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 PIP4K2CQ8TBX8 421 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 RHOXF2Q9BQY4 288 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 DUX4Q9UBX2 424 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 BCAP29Q9UHQ4 241 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 ZBTB21Q9ULJ3 1066 aa8.56□□□□□ -1.04
LIMCH1-201ENST00000313860 EIF3AQ14152 1382 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 TBC1D8O95759 1140 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 PUDPQ08623 228 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 ARL13BQ3SXY8 428 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 TMTC2Q8N394 836 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 EFHD2Q96C19 240 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 SMARCAD1Q9H4L7 1026 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 TOP1P11387 765 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 PSMD2Q13200 908 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 BRD3Q15059 726 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 TBCCQ15814 346 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 VSIG1Q86XK7 387 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 TEX19Q8NA77 164 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 IFT81Q8WYA0 676 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 RASAL2Q9UJF2 1139 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 STXBP3O00186 592 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 TRAPPC10P48553 1259 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 UBLCP1Q8WVY7 318 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms