RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 PDE8BO95263 885 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 SF3A1Q15459 793 aaKnown RBP13.54□□□□□ -0.24
PTPN2-201ENST00000309660 CCDC102BQ68D86 513 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 NCOA7Q8NI08 942 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 SMARCC2Q8TAQ2 1214 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 DNAJC25Q9H1X3 360 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 SEC31BQ9NQW1 1179 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 PDE8AO60658 829 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 CCAR1Q8IX12 1150 aaKnown RBP13.54□□□□□ -0.24
PTPN2-201ENST00000309660 LLPHQ9BRT6 129 aaKnown RBP13.54□□□□□ -0.24
PTPN2-201ENST00000309660 DDX19AQ9NUU7 478 aaKnown RBP13.54□□□□□ -0.24
PTPN2-201ENST00000309660 UBN2Q6ZU65 1347 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 ZNF532Q9HCE3 1301 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 FOXP2O15409 715 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 FAM200AQ8TCP9 573 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 AIDAQ96BJ3 306 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 INCENPQ9NQS7 918 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 ORC3Q9UBD5 711 aaPredicted RBP13.54□□□□□ -0.24
PTPN2-201ENST00000309660 WWC3Q9ULE0 1092 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 MRVI1Q9Y6F6 885 aa13.54□□□□□ -0.24
PTPN2-201ENST00000309660 XIRP1Q702N8 1843 aaKnown RBP13.53□□□□□ -0.24
PTPN2-201ENST00000309660 DDB1Q16531 1140 aa13.53□□□□□ -0.24
PTPN2-201ENST00000309660 CCDC73Q6ZRK6 1079 aa13.53□□□□□ -0.24
PTPN2-201ENST00000309660 C8orf76Q96K31 380 aa13.53□□□□□ -0.24
PTPN2-201ENST00000309660 KCNQ4P56696 695 aa13.53□□□□□ -0.24
PTPN2-201ENST00000309660 RRP12Q5JTH9 1297 aaKnown RBP13.53□□□□□ -0.24
PTPN2-201ENST00000309660 ZNF500O60304 480 aaPredicted RBP13.52□□□□□ -0.24
PTPN2-201ENST00000309660 NFXL1Q6ZNB6 911 aa13.52□□□□□ -0.24
PTPN2-201ENST00000309660 MICU3Q86XE3 530 aa13.52□□□□□ -0.24
PTPN2-201ENST00000309660 PLA2G12BQ9BX93 195 aa13.52□□□□□ -0.24
PTPN2-201ENST00000309660 FBXO3Q9UK99 471 aa13.52□□□□□ -0.24
PTPN2-201ENST00000309660 B4E1Z4 1266 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 SUSD4Q5VX71 490 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.52□□□□□ -0.25
PTPN2-201ENST00000309660 TRIM5Q9C035 493 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 CLSTN2Q9H4D0 955 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 CARMIL3Q8ND23 1372 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 ZNF165P49910 485 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 ZSCAN25Q6NSZ9 544 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 BICDL1Q6ZP65 573 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 ZNF274Q96GC6 653 aaPredicted RBP13.52□□□□□ -0.25
PTPN2-201ENST00000309660 MYL10Q9BUA6 226 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 CBX8Q9HC52 389 aa13.52□□□□□ -0.25
PTPN2-201ENST00000309660 ADD2P35612 726 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 RBM10P98175 930 aaKnown RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 NAA16Q6N069 864 aaPredicted RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 MAGEB6Q8N7X4 407 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 FSIP1Q8NA03 581 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 ZNF396Q96N95 335 aaPredicted RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 NIP7Q9Y221 180 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 KINO60870 393 aaKnown RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 FDPSP14324 419 aaKnown RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 PDE6AP16499 860 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 GNL2Q13823 731 aaKnown RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 RIC1Q4ADV7 1423 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 TJP1Q07157 1748 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 ADD1P35611 737 aaKnown RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 IL6STP40189 918 aaPredicted RBP13.51□□□□□ -0.25
PTPN2-201ENST00000309660 STK38Q15208 465 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 AIFM3Q96NN9 605 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 BCL9O00512 1426 aa13.51□□□□□ -0.25
PTPN2-201ENST00000309660 CDHR2Q9BYE9 1310 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 CRKLP46109 303 aaKnown RBP13.5□□□□□ -0.25
PTPN2-201ENST00000309660 ANTXR2P58335 489 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 PUM3Q15397 648 aaKnown RBP13.5□□□□□ -0.25
PTPN2-201ENST00000309660 SMIM5Q71RC9 77 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 TBC1D10CQ8IV04 446 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 CCDC82Q8N4S0 544 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 ARID3AQ99856 593 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 DHX16O60231 1041 aaKnown RBP13.5□□□□□ -0.25
PTPN2-201ENST00000309660 TTF1Q15361 905 aaPredicted RBP13.5□□□□□ -0.25
PTPN2-201ENST00000309660 MIGA1Q8NAN2 632 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 NKX2-3Q8TAU0 364 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 SDF4Q9BRK5 362 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 ARMT1Q9H993 441 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 ABCF2Q9UG63 623 aa13.5□□□□□ -0.25
PTPN2-201ENST00000309660 A0A1B0GVL5 298 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 MBD4O95243 580 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 PIP4K2BP78356 416 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 MB21D2Q8IYB1 491 aaPredicted RBP13.49□□□□□ -0.25
PTPN2-201ENST00000309660 PHKBQ93100 1093 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 AGXT2Q9BYV1 514 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 GOLPH3LQ9H4A5 285 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 NUP188Q5SRE5 1749 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 SLC5A1P13866 664 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 BCAMP50895 628 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 CTDSPL2Q05D32 466 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 LPIN2Q92539 896 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 UTP14AQ9BVJ6 771 aaKnown RBP13.49□□□□□ -0.25
PTPN2-201ENST00000309660 NAPBQ9H115 298 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 SENP2Q9HC62 589 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 CCDC87Q9NVE4 849 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 GOLGA6L19H0YKK7 550 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 GTF2E1P29083 439 aaPredicted RBP13.49□□□□□ -0.25
PTPN2-201ENST00000309660 RASGRF1Q13972 1273 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 SYNE3Q6ZMZ3 975 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 SPATA5Q8NB90 893 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 ZKSCAN3Q9BRR0 538 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 TOGARAM1Q9Y4F4 1720 aa13.49□□□□□ -0.25
PTPN2-201ENST00000309660 UBR2Q8IWV8 1755 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 236.9 ms