RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZBTB48P10074 688 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-201ENST00000301897 KLRK1P26718 216 aa18.82■□□□□ 0.6
CCDC88B-201ENST00000301897 FKBP1AP62942 108 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-201ENST00000301897 IFIT5Q13325 482 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-201ENST00000301897 PRKG1Q13976 671 aa18.82■□□□□ 0.6
CCDC88B-201ENST00000301897 MAP3K11Q16584 847 aa18.82■□□□□ 0.6
CCDC88B-201ENST00000301897 SUPT20HL1Q3ZLR7 823 aa18.81■□□□□ 0.6
CCDC88B-201ENST00000301897 IL1R1P14778 569 aa18.8■□□□□ 0.6
CCDC88B-201ENST00000301897 LAMB1P07942 1786 aa18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 IRS2Q9Y4H2 1338 aa18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 SPDYE2BA6NHP3 402 aa18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 SPDYE6P0CI01 402 aa18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 IREB2P48200 963 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 OTUD7BQ6GQQ9 843 aa18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 IFNL1Q8IU54 200 aa18.78■□□□□ 0.6
CCDC88B-201ENST00000301897 TAF5LO75529 589 aa18.77■□□□□ 0.6
CCDC88B-201ENST00000301897 CFAP100Q494V2 611 aa18.77■□□□□ 0.6
CCDC88B-201ENST00000301897 CERS5Q8N5B7 392 aa18.77■□□□□ 0.6
CCDC88B-201ENST00000301897 WNK4Q96J92 1243 aa18.77■□□□□ 0.6
CCDC88B-201ENST00000301897 CHMP3Q9Y3E7 222 aa18.77■□□□□ 0.6
CCDC88B-201ENST00000301897 FANCIQ9NVI1 1328 aa18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 A0A1B0GUL6 1792 aa18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 FOXO4P98177 505 aa18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 TNFAIP1Q13829 316 aa18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 CCDC57Q2TAC2 916 aa18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 TAF7LQ5H9L4 462 aa18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 INTS3Q68E01 1043 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 HELBQ8NG08 1087 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-201ENST00000301897 VAMP4O75379 141 aa18.75■□□□□ 0.59
CCDC88B-201ENST00000301897 LDHAL6AQ6ZMR3 332 aa18.75■□□□□ 0.59
CCDC88B-201ENST00000301897 WDR63Q8IWG1 891 aa18.75■□□□□ 0.59
CCDC88B-201ENST00000301897 ERO1AQ96HE7 468 aa18.75■□□□□ 0.59
CCDC88B-201ENST00000301897 R3HDMLQ9H3Y0 253 aa18.75■□□□□ 0.59
CCDC88B-201ENST00000301897 VEZTQ9HBM0 779 aa18.75■□□□□ 0.59
CCDC88B-201ENST00000301897 SSC5DA1L4H1 1573 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 F8W031 263 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 SNAP23O00161 211 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 RBM5P52756 815 aaKnown RBP eCLIP18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 BEND3Q5T5X7 828 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 LMBR1LQ6UX01 489 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 ANKRD13AQ8IZ07 590 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 GCC1Q96CN9 775 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 CLMNQ96JQ2 1002 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 TRIM17Q9Y577 477 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 KIAA0100Q14667 2235 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 HTTP42858 3142 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 FAM205AQ6ZU69 1335 aa18.74■□□□□ 0.59
CCDC88B-201ENST00000301897 CLRN2A0PK11 232 aa18.73■□□□□ 0.59
CCDC88B-201ENST00000301897 CCDC184Q52MB2 194 aa18.73■□□□□ 0.59
CCDC88B-201ENST00000301897 OTOP1Q7RTM1 612 aa18.73■□□□□ 0.59
CCDC88B-201ENST00000301897 PRMT6Q96LA8 375 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-201ENST00000301897 CNNM1Q9NRU3 951 aa18.73■□□□□ 0.59
CCDC88B-201ENST00000301897 GRM8O00222 908 aa18.72■□□□□ 0.59
CCDC88B-201ENST00000301897 IGF2BP3O00425 579 aaKnown RBP eCLIP18.72■□□□□ 0.59
CCDC88B-201ENST00000301897 RASA3Q14644 834 aa18.72■□□□□ 0.59
CCDC88B-201ENST00000301897 NBPF12Q5TAG4 269 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-201ENST00000301897 SERPINA10Q9UK55 444 aa18.72■□□□□ 0.59
CCDC88B-201ENST00000301897 FZD1Q9UP38 647 aa18.72■□□□□ 0.59
CCDC88B-201ENST00000301897 UBE4AQ14139 1066 aa18.71■□□□□ 0.59
CCDC88B-201ENST00000301897 C9orf78Q9NZ63 289 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-201ENST00000301897 F6X3S4 739 aa18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 PLIN1O60240 522 aa18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 USP2O75604 605 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 ALDH1L1O75891 902 aa18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 EXOSC9Q06265 439 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 SPDYE2Q495Y8 402 aa18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 MFSD14BQ5SR56 506 aa18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 PCDHAC2Q9Y5I4 1007 aa18.7■□□□□ 0.58
CCDC88B-201ENST00000301897 TESPA1A2RU30 521 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-201ENST00000301897 HIBADHP31937 336 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-201ENST00000301897 ARHGEF6Q15052 776 aa18.69■□□□□ 0.58
CCDC88B-201ENST00000301897 TDRD7Q8NHU6 1098 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-201ENST00000301897 CENPFP49454 3210 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 TNNI2P48788 182 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 SP3Q02447 781 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 CRHR2Q13324 411 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 ZNF594Q96JF6 807 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 EFCC1Q9HA90 598 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 ZNF70Q9UC06 446 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 TTF2Q9UNY4 1162 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 PTPN22Q9Y2R2 807 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 ARAP2Q8WZ64 1704 aa18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 RBBP6Q7Z6E9 1792 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-201ENST00000301897 GJA5P36382 358 aa18.67■□□□□ 0.58
CCDC88B-201ENST00000301897 EPHA10Q5JZY3 1008 aa18.67■□□□□ 0.58
CCDC88B-201ENST00000301897 SRCIN1Q9C0H9 1055 aa18.67■□□□□ 0.58
CCDC88B-201ENST00000301897 MRS2Q9HD23 443 aa18.67■□□□□ 0.58
CCDC88B-201ENST00000301897 JAG2Q9Y219 1238 aa18.67■□□□□ 0.58
CCDC88B-201ENST00000301897 OTOFQ9HC10 1997 aa18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 WDHD1O75717 1129 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 DZIP1LQ8IYY4 767 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 CD99L2Q8TCZ2 262 aa18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 ARMC5Q96C12 935 aa18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 OPTNQ96CV9 577 aa18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 MKI67P46013 3256 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 MROH5Q6ZUA9 1318 aa18.66■□□□□ 0.58
CCDC88B-201ENST00000301897 GTF2A2P52657 109 aa18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 HDLBPQ00341 1268 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 VPS37DQ86XT2 251 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms