RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SMC5Q8IY18 1101 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 IGSF22Q8N9C0 903 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 ZNF215Q9UL58 517 aaPredicted RBP13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 MCM7P33993 719 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 CNGA4Q8IV77 575 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 PSMB7Q99436 277 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 SLC26A6Q9BXS9 759 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 KIF1BPQ96EK5 621 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 CCDC85AQ96PX6 553 aaPredicted RBP13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 ZBTB22O15209 634 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 PLCB3Q01970 1234 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 KRT71Q3SY84 523 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 LARSQ9P2J5 1176 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 GOLGA4Q13439 2230 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 MINDY4BA8MYZ0 360 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 MRPS9P82933 396 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 TRPC3Q13507 836 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 HHATQ5VTY9 493 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 DENND2CQ68D51 928 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 TCEANC2Q96MN5 208 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 NACADO15069 1562 aa13.2□□□□□ -0.3
SHROOM3-201ENST00000296043 ANKRD30BQ9BXX2 1392 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 DHX29Q7Z478 1369 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 HAND2P61296 217 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 CCDC26Q8TAB7 109 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 CEP104O60308 925 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 THUMPD2Q9BTF0 503 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 ASIC1P78348 528 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 SECISBP2LQ93073 1101 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 MIS18AQ9NYP9 233 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 ABCF2Q9UG63 623 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 ERBINQ96RT1 1412 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 NLRP5P59047 1200 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 SPAG1Q07617 926 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 CALCOCO2Q13137 446 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 GPR161Q8N6U8 529 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 BICD1Q96G01 975 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 PPFIA4O75335 1185 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 PHEXP78562 749 aa13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 PRPF38AQ8NAV1 312 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-201ENST00000296043 UBA7P41226 1012 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 MMS22LQ6ZRQ5 1243 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 KLHL7Q8IXQ5 586 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 CRCPO75575 148 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 CLUL1Q15846 466 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 RUFY4Q6ZNE9 571 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 TAOK1Q7L7X3 1001 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 RAB34Q9BZG1 259 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 ANKRD42Q8N9B4 389 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 FAM71BQ8TC56 605 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 TEX2Q8IWB9 1127 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 CA8P35219 290 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 BRD3Q15059 726 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 TCP11Q8WWU5 503 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 PABPN1LA6NDY0 278 aaKnown RBP13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 IWS1Q96ST2 819 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 CBX8Q9HC52 389 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 TCP11L1Q9NUJ3 509 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 TAF11Q15544 211 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 CEP70Q8NHQ1 597 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 LRP2BPQ9P2M1 347 aa13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 G3BP2Q9UN86 482 aaKnown RBP13.18□□□□□ -0.3
SHROOM3-201ENST00000296043 SEC24BO95487 1268 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 BCAS4Q8TDM0 211 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 Q9H521 79 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 TACC3Q9Y6A5 838 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 NDC80O14777 642 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 RANBP6O60518 1105 aaKnown RBP13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 KIF1CO43896 1103 aaKnown RBP13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 RAD50Q92878 1312 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 SEL1L2Q5TEA6 688 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 IQCA1Q86XH1 822 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 AMPD3Q01432 767 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 NUCB1Q02818 461 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 FAM204AQ9H8W3 233 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 IFIT3O14879 490 aaKnown RBP13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 SH3BP5O60239 455 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 PCYT1AP49585 367 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 GPIHBP1Q8IV16 184 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 PSMD2Q13200 908 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 DHX58Q96C10 678 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 PLCB1Q9NQ66 1216 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 THEGQ9P2T0 379 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 SCOCQ9UIL1 159 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 PAK2Q13177 524 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 SSX2IPQ9Y2D8 614 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 ERICH3Q5RHP9 1530 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 SKOR1P84550 965 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 ATG3Q9NT62 314 aa13.17□□□□□ -0.3
SHROOM3-201ENST00000296043 ZNF500O60304 480 aaPredicted RBP13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 TRIM27P14373 513 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 SERPINB6P35237 376 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 METAP2P50579 478 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 NAPBQ9H115 298 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 TUBB2AQ13885 445 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 NUDCD3Q8IVD9 361 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 TUBB2BQ9BVA1 445 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 YIPF3Q9GZM5 350 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms