RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PKD2L1Q9P0L9 805 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 SAP30BPQ9UHR5 308 aaKnown RBP13.01□□□□□ -0.33
USP53-201ENST00000274030 A0A1W2PRG0 241 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 CCDC172P0C7W6 258 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 KRT2P35908 639 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 RTCBQ9Y3I0 505 aaKnown RBP13.01□□□□□ -0.33
USP53-201ENST00000274030 DMRT2Q9Y5R5 561 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 UBXN1Q04323 297 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 DHX32Q7L7V1 743 aaKnown RBP13.01□□□□□ -0.33
USP53-201ENST00000274030 TTC41PQ6P2S7 1318 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 GPATCH8Q9UKJ3 1502 aaKnown RBP13.01□□□□□ -0.33
USP53-201ENST00000274030 SPAG1Q07617 926 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 IFNKQ9P0W0 207 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 GUCA1BQ9UMX6 200 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 A0A1B0GVL5 298 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 MBD4O95243 580 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 EEF2P13639 858 aaKnown RBP13.01□□□□□ -0.33
USP53-201ENST00000274030 RUFY3Q7L099 469 aa13.01□□□□□ -0.33
USP53-201ENST00000274030 FLT4P35916 1363 aa13□□□□□ -0.33
USP53-201ENST00000274030 PTPRKQ15262 1439 aa13□□□□□ -0.33
USP53-201ENST00000274030 LDHBP07195 334 aaKnown RBP13□□□□□ -0.33
USP53-201ENST00000274030 SNX21Q969T3 373 aa13□□□□□ -0.33
USP53-201ENST00000274030 ZNF174Q15697 407 aa13□□□□□ -0.33
USP53-201ENST00000274030 IPO4Q8TEX9 1081 aaKnown RBP13□□□□□ -0.33
USP53-201ENST00000274030 CCDC42Q96M95 316 aa13□□□□□ -0.33
USP53-201ENST00000274030 PLCB3Q01970 1234 aa13□□□□□ -0.33
USP53-201ENST00000274030 ARFGAP3Q9NP61 516 aa13□□□□□ -0.33
USP53-201ENST00000274030 SOS1Q07889 1333 aaPredicted RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 VWA3AA6NCI4 1184 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 FAM13AO94988 1023 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 EIF6P56537 245 aaKnown RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 PRIMPOLQ96LW4 560 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 MPHOSPH6Q99547 160 aaKnown RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 CALCOCO1Q9P1Z2 691 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 UHRF1BP1LA0JNW5 1464 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 RIMS2Q9UQ26 1411 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 RNMTO43148 476 aaKnown RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 CALML3P27482 149 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 MAP3K5Q99683 1374 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 B4E1Z4 1266 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 TACC1O75410 805 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 CKAP4Q07065 602 aaKnown RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 NDUFB9Q9Y6M9 179 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 ARL1P40616 181 aaPredicted RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 CCDC155Q8N6L0 562 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 ZNF594Q96JF6 807 aaPredicted RBP12.99□□□□□ -0.33
USP53-201ENST00000274030 NYXQ9GZU5 481 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 MAP3K19Q56UN5 1328 aa12.99□□□□□ -0.33
USP53-201ENST00000274030 PLCH2O75038 1416 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 SMIM23A6NLE4 172 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 DYNC1I1O14576 645 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 GNAT2P19087 354 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 KIF5AQ12840 1032 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 SPECC1LQ69YQ0 1117 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 DTHD1Q6ZMT9 781 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 CEP63Q96MT8 703 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 FERMT1Q9BQL6 677 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 CUL7Q14999 1698 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 HOXC9P31274 260 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 FAM173BQ6P4H8 233 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 GSTA5Q7RTV2 222 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 USP37Q86T82 979 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 PLVAPQ9BX97 442 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 TOM1O60784 492 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 LETM2Q2VYF4 491 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 GRIPAP1Q4V328 841 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 CCDC24Q8N4L8 307 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 DCAF5Q96JK2 942 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 PPP1R9BQ96SB3 815 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 SELENOOQ9BVL4 669 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 USP26Q9BXU7 913 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 GNPATO15228 680 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 RTL9Q8NET4 1388 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 CTAGE9A4FU28 777 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 PRDM1O75626 825 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 CCDC50Q8IVM0 306 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 BBXQ8WY36 941 aaPredicted RBP12.98□□□□□ -0.33
USP53-201ENST00000274030 IMPG2Q9BZV3 1241 aa12.98□□□□□ -0.33
USP53-201ENST00000274030 A0A1B0GUL7 405 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 KCNA6P17658 529 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 RAB3GAP1Q15042 981 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 ATRIPQ8WXE1 791 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 UIMC1Q96RL1 719 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 NCOA5Q9HCD5 579 aaKnown RBP12.97□□□□□ -0.33
USP53-201ENST00000274030 CCT6AP40227 531 aaKnown RBP12.97□□□□□ -0.33
USP53-201ENST00000274030 ZNF569Q5MCW4 686 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 TSNARE1Q96NA8 513 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 GPCPD1Q9NPB8 672 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 DNAJC21Q5F1R6 531 aaKnown RBP12.97□□□□□ -0.33
USP53-201ENST00000274030 DCAF17Q5H9S7 520 aaPredicted RBP12.97□□□□□ -0.33
USP53-201ENST00000274030 TESK2Q96S53 571 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 PARD3Q8TEW0 1356 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 RHOXF2BP0C7M4 288 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 NEK11Q8NG66 645 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 RHOXF2Q9BQY4 288 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 DBNDD2Q9BQY9 259 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 BTG4Q9NY30 223 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 MAPK8IP1Q9UQF2 711 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 POLR3AO14802 1390 aaPredicted RBP12.97□□□□□ -0.33
USP53-201ENST00000274030 RAPGEF1Q13905 1077 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms