RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NLRP10Q86W26 655 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 MIGA1Q8NAN2 632 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 PIH1D3Q9NQM4 214 aaKnown RBP19.48■□□□□ 0.71
VPS54-201ENST00000272322 SH3TC1Q8TE82 1336 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 GOLGA6L19H0YKK7 550 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 KINO60870 393 aaKnown RBP19.48■□□□□ 0.71
VPS54-201ENST00000272322 STK38Q15208 465 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 SLC4A8Q2Y0W8 1093 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 C16orf45Q96MC5 204 aaPredicted RBP19.48■□□□□ 0.71
VPS54-201ENST00000272322 DZIP3Q86Y13 1208 aaKnown RBP19.47■□□□□ 0.71
VPS54-201ENST00000272322 CLSTN2Q9H4D0 955 aa19.47■□□□□ 0.71
VPS54-201ENST00000272322 AKAP2Q9Y2D5 859 aa19.47■□□□□ 0.71
VPS54-201ENST00000272322 ANKRD18BA2A2Z9 1011 aa19.47■□□□□ 0.71
VPS54-201ENST00000272322 CTDSPL2Q05D32 466 aa19.47■□□□□ 0.71
VPS54-201ENST00000272322 HSP90AA4PQ58FG1 418 aa19.47■□□□□ 0.71
VPS54-201ENST00000272322 ZBTB38Q8NAP3 1195 aaPredicted RBP19.47■□□□□ 0.71
VPS54-201ENST00000272322 HMGB1P09429 215 aaKnown RBP19.46■□□□□ 0.71
VPS54-201ENST00000272322 TRDNQ13061 729 aa19.46■□□□□ 0.71
VPS54-201ENST00000272322 DDX19AQ9NUU7 478 aaKnown RBP19.46■□□□□ 0.71
VPS54-201ENST00000272322 ZNF532Q9HCE3 1301 aa19.45■□□□□ 0.7
VPS54-201ENST00000272322 SPECC1Q5M775 1068 aa19.45■□□□□ 0.7
VPS54-201ENST00000272322 ABCF2Q9UG63 623 aa19.45■□□□□ 0.7
VPS54-201ENST00000272322 PRKAB2O43741 272 aa19.45■□□□□ 0.7
VPS54-201ENST00000272322 GIGYF2Q6Y7W6 1299 aaKnown RBP19.45■□□□□ 0.7
VPS54-201ENST00000272322 SMIM22K7EJ46 135 aa19.45■□□□□ 0.7
VPS54-201ENST00000272322 ILDR1Q86SU0 546 aaPredicted RBP19.45■□□□□ 0.7
VPS54-201ENST00000272322 JAG2Q9Y219 1238 aa19.45■□□□□ 0.7
VPS54-201ENST00000272322 EXOC5O00471 708 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 MCM5P33992 734 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 CCDC102BQ68D86 513 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 PIBF1Q8WXW3 757 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 AIDAQ96BJ3 306 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 PCDHA7Q9UN72 937 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 ANTXR2P58335 489 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 APPBP2Q92624 585 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 ZSCAN16Q9H4T2 348 aaPredicted RBP19.44■□□□□ 0.7
VPS54-201ENST00000272322 ARMT1Q9H993 441 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 PCCAP05165 728 aaPredicted RBP19.44■□□□□ 0.7
VPS54-201ENST00000272322 ZRSR1Q15695 479 aaKnown RBP19.44■□□□□ 0.7
VPS54-201ENST00000272322 TBC1D10CQ8IV04 446 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 MAGEB6Q8N7X4 407 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 SMARCC2Q8TAQ2 1214 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 MPHOSPH8Q99549 860 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 CLIP2Q9UDT6 1046 aa19.44■□□□□ 0.7
VPS54-201ENST00000272322 PALLDQ8WX93 1383 aa19.43■□□□□ 0.7
VPS54-201ENST00000272322 NCOA7Q8NI08 942 aa19.43■□□□□ 0.7
VPS54-201ENST00000272322 TRMT1Q9NXH9 659 aaKnown RBP19.43■□□□□ 0.7
VPS54-201ENST00000272322 TRPM3Q9HCF6 1732 aaPredicted RBP19.43■□□□□ 0.7
VPS54-201ENST00000272322 CARMIL3Q8ND23 1372 aa19.43■□□□□ 0.7
VPS54-201ENST00000272322 MAP3K15Q6ZN16 1313 aa19.43■□□□□ 0.7
VPS54-201ENST00000272322 CTSWP56202 376 aa19.43■□□□□ 0.7
VPS54-201ENST00000272322 HMGN5P82970 282 aaKnown RBP19.43■□□□□ 0.7
VPS54-201ENST00000272322 SYNE3Q6ZMZ3 975 aa19.43■□□□□ 0.7
VPS54-201ENST00000272322 hCG_1642624A0A1W2PR95 340 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 BCAMP50895 628 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 NDUFA8P51970 172 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 CYB5R4Q7L1T6 521 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 RIPOR2Q9Y4F9 1068 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 ELP1O95163 1332 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 KIF28PB7ZC32 967 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 CTNNA3Q9UI47 895 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 CCDC144BQ3MJ40 725 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 AOPEPQ8N6M6 819 aa19.42■□□□□ 0.7
VPS54-201ENST00000272322 SRCAPQ6ZRS2 3230 aa19.41■□□□□ 0.7
VPS54-201ENST00000272322 KIF3AQ9Y496 699 aa19.41■□□□□ 0.7
VPS54-201ENST00000272322 NUP133Q8WUM0 1156 aa19.41■□□□□ 0.7
VPS54-201ENST00000272322 MINDY4BA8MYZ0 360 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 GOLGA6L6A8MZA4 724 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 CIAO1O76071 339 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 MBD4O95243 580 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 ATP6V1AP38606 617 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 ZNF396Q96N95 335 aaPredicted RBP19.4■□□□□ 0.7
VPS54-201ENST00000272322 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.4■□□□□ 0.7
VPS54-201ENST00000272322 GPR108Q9NPR9 543 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 COL5A2P05997 1499 aaPredicted RBP19.4■□□□□ 0.7
VPS54-201ENST00000272322 AFDNP55196 1824 aaKnown RBP19.4■□□□□ 0.7
VPS54-201ENST00000272322 SCN11AQ9UI33 1791 aa19.4■□□□□ 0.7
VPS54-201ENST00000272322 PDE8BO95263 885 aa19.39■□□□□ 0.7
VPS54-201ENST00000272322 CYP19A1P11511 503 aaPredicted RBP19.39■□□□□ 0.7
VPS54-201ENST00000272322 HPS5Q9UPZ3 1129 aa19.39■□□□□ 0.7
VPS54-201ENST00000272322 USP54Q70EL1 1684 aa19.39■□□□□ 0.7
VPS54-201ENST00000272322 UBN2Q6ZU65 1347 aa19.39■□□□□ 0.7
VPS54-201ENST00000272322 RRP9O43818 475 aaKnown RBP19.39■□□□□ 0.69
VPS54-201ENST00000272322 PDE6AP16499 860 aa19.39■□□□□ 0.69
VPS54-201ENST00000272322 METAP2P50579 478 aaKnown RBP eCLIP19.39■□□□□ 0.69
VPS54-201ENST00000272322 CLIC6Q96NY7 704 aa19.39■□□□□ 0.69
VPS54-201ENST00000272322 CPDO75976 1380 aa19.39■□□□□ 0.69
VPS54-201ENST00000272322 ZNF75DP51815 510 aa19.39■□□□□ 0.69
VPS54-201ENST00000272322 SUSD4Q5VX71 490 aa19.39■□□□□ 0.69
VPS54-201ENST00000272322 ALG1Q9BT22 464 aa19.39■□□□□ 0.69
VPS54-201ENST00000272322 ALDH8A1Q9H2A2 487 aaPredicted RBP19.39■□□□□ 0.69
VPS54-201ENST00000272322 SOS2Q07890 1332 aaPredicted RBP19.39■□□□□ 0.69
VPS54-201ENST00000272322 CDC27P30260 824 aa19.38■□□□□ 0.69
VPS54-201ENST00000272322 NKX1-1Q15270 411 aaPredicted RBP19.38■□□□□ 0.69
VPS54-201ENST00000272322 CACTINQ8WUQ7 758 aaKnown RBP19.38■□□□□ 0.69
VPS54-201ENST00000272322 RCOR1Q9UKL0 485 aa19.38■□□□□ 0.69
VPS54-201ENST00000272322 NPHP1O15259 732 aa19.38■□□□□ 0.69
VPS54-201ENST00000272322 SNW1Q13573 536 aaKnown RBP19.38■□□□□ 0.69
VPS54-201ENST00000272322 FAM182BQ5T319 152 aa19.38■□□□□ 0.69
VPS54-201ENST00000272322 KIAA1524Q8TCG1 905 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms