RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CCDC129Q6ZRS4 1044 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 SNX14Q9Y5W7 946 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 PDE6AP16499 860 aa16.92■□□□□ 0.3
SS18-201ENST00000269137 WASHC4Q2M389 1173 aa16.92■□□□□ 0.3
SS18-201ENST00000269137 C2CD5Q86YS7 1000 aa16.92■□□□□ 0.3
SS18-201ENST00000269137 RASEFQ8IZ41 740 aa16.92■□□□□ 0.3
SS18-201ENST00000269137 DSCC1Q9BVC3 393 aa16.92■□□□□ 0.3
SS18-201ENST00000269137 GGA1Q9UJY5 639 aa16.92■□□□□ 0.3
SS18-201ENST00000269137 NSFL1CQ9UNZ2 370 aaKnown RBP16.92■□□□□ 0.3
SS18-201ENST00000269137 U3KPZ7 1027 aaPredicted RBP16.92■□□□□ 0.3
SS18-201ENST00000269137 TCRBV5S4A2TA0A5A2 114 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 H0YIN7 160 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 M0R2C6 588 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 RNF20Q5VTR2 975 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 CREB3L3Q68CJ9 461 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 PRPF40BQ6NWY9 871 aaKnown RBP16.91■□□□□ 0.3
SS18-201ENST00000269137 SLC51AQ86UW1 340 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 TXNRD3Q86VQ6 643 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 COL1A1P02452 1464 aaPredicted RBP16.91■□□□□ 0.3
SS18-201ENST00000269137 ST18O60284 1047 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 UFL1O94874 794 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 ZKSCAN1P17029 563 aaPredicted RBP16.91■□□□□ 0.3
SS18-201ENST00000269137 TSGA10IPQ3SY00 556 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 WWC3Q9ULE0 1092 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 IQSEC3Q9UPP2 1182 aaPredicted RBP16.91■□□□□ 0.3
SS18-201ENST00000269137 LTBP1Q14766 1721 aa16.91■□□□□ 0.3
SS18-201ENST00000269137 ZNF532Q9HCE3 1301 aa16.9■□□□□ 0.3
SS18-201ENST00000269137 SLC27A2O14975 620 aa16.9■□□□□ 0.3
SS18-201ENST00000269137 CD2BP2O95400 341 aaKnown RBP16.9■□□□□ 0.3
SS18-201ENST00000269137 TBC1D16Q8TBP0 767 aa16.9■□□□□ 0.3
SS18-201ENST00000269137 TM6SF1Q9BZW5 370 aa16.9■□□□□ 0.3
SS18-201ENST00000269137 PUS7LQ9H0K6 701 aaKnown RBP16.9■□□□□ 0.3
SS18-201ENST00000269137 HSPD1P10809 573 aaKnown RBP16.89■□□□□ 0.29
SS18-201ENST00000269137 ZNF804AQ7Z570 1209 aa16.89■□□□□ 0.29
SS18-201ENST00000269137 LRP2BPQ9P2M1 347 aa16.89■□□□□ 0.29
SS18-201ENST00000269137 MYH13Q9UKX3 1938 aa16.89■□□□□ 0.29
SS18-201ENST00000269137 IGSF3O75054 1194 aa16.89■□□□□ 0.29
SS18-201ENST00000269137 FRAT2O75474 233 aaPredicted RBP16.89■□□□□ 0.29
SS18-201ENST00000269137 NEK4P51957 841 aa16.89■□□□□ 0.29
SS18-201ENST00000269137 TDRD7Q8NHU6 1098 aaKnown RBP16.89■□□□□ 0.29
SS18-201ENST00000269137 ZNF622Q969S3 477 aaKnown RBP eCLIP16.89■□□□□ 0.294e-7■□□□□ 10.6
SS18-201ENST00000269137 POLLQ9UGP5 575 aa16.89■□□□□ 0.29
SS18-201ENST00000269137 C10orf71Q711Q0 1435 aa16.88■□□□□ 0.29
SS18-201ENST00000269137 K7ELQ4 463 aaPredicted RBP16.88■□□□□ 0.29
SS18-201ENST00000269137 GPAA1O43292 621 aa16.88■□□□□ 0.29
SS18-201ENST00000269137 VPS53Q5VIR6 699 aa16.88■□□□□ 0.29
SS18-201ENST00000269137 TMED8Q6PL24 325 aaPredicted RBP16.88■□□□□ 0.29
SS18-201ENST00000269137 MAGEB6Q8N7X4 407 aa16.88■□□□□ 0.29
SS18-201ENST00000269137 CNKSR1Q969H4 720 aa16.88■□□□□ 0.29
SS18-201ENST00000269137 MCM2P49736 904 aa16.87■□□□□ 0.29
SS18-201ENST00000269137 TMX4Q9H1E5 349 aaPredicted RBP16.87■□□□□ 0.29
SS18-201ENST00000269137 MPNDQ8N594 471 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 UPF1Q92900 1129 aaKnown RBP eCLIP16.86■□□□□ 0.29
SS18-201ENST00000269137 ABCF2Q9UG63 623 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 SALL1Q9NSC2 1324 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 IL1R1P14778 569 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 KRT32Q14532 448 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 ZSWIM6Q9HCJ5 1215 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 CTNNA3Q9UI47 895 aa16.86■□□□□ 0.29
SS18-201ENST00000269137 RPAP1Q9BWH6 1393 aaPredicted RBP16.86■□□□□ 0.29
SS18-201ENST00000269137 C6orf229H3BNL8 230 aa16.85■□□□□ 0.29
SS18-201ENST00000269137 FOXP2O15409 715 aa16.85■□□□□ 0.29
SS18-201ENST00000269137 PSMA5P28066 241 aa16.85■□□□□ 0.29
SS18-201ENST00000269137 ZGPATQ8N5A5 531 aaKnown RBP16.85■□□□□ 0.29
SS18-201ENST00000269137 WDR66Q8TBY9 1149 aa16.85■□□□□ 0.29
SS18-201ENST00000269137 GPR101Q96P66 508 aaPredicted RBP16.85■□□□□ 0.29
SS18-201ENST00000269137 STRBPQ96SI9 672 aaKnown RBP16.85■□□□□ 0.29
SS18-201ENST00000269137 UPF3BQ9BZI7 483 aaKnown RBP16.85■□□□□ 0.29
SS18-201ENST00000269137 CD209Q9NNX6 404 aa16.85■□□□□ 0.29
SS18-201ENST00000269137 RAI14Q9P0K7 980 aa16.85■□□□□ 0.29
SS18-201ENST00000269137 CYP21A2P08686 494 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 CHRNA5P30532 468 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 ADCK5Q3MIX3 580 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 SPTY2D1Q68D10 685 aaPredicted RBP16.84■□□□□ 0.29
SS18-201ENST00000269137 AIDAQ96BJ3 306 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 JAKMIP1Q96N16 626 aaKnown RBP16.84■□□□□ 0.29
SS18-201ENST00000269137 CACNA1SQ13698 1873 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 SLX4Q8IY92 1834 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 CASTP20810 708 aaKnown RBP16.84■□□□□ 0.29
SS18-201ENST00000269137 CHAF1AQ13111 956 aaPredicted RBP16.84■□□□□ 0.29
SS18-201ENST00000269137 DPP8Q6V1X1 898 aaPredicted RBP16.84■□□□□ 0.29
SS18-201ENST00000269137 C7orf43Q8WVR3 580 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 TTC14Q96N46 770 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 DUOX1Q9NRD9 1551 aa16.84■□□□□ 0.29
SS18-201ENST00000269137 CYP7A1P22680 504 aa16.83■□□□□ 0.28
SS18-201ENST00000269137 ALX1Q15699 326 aa16.83■□□□□ 0.28
SS18-201ENST00000269137 CC2D2BQ6DHV5 1058 aa16.83■□□□□ 0.28
SS18-201ENST00000269137 MTFR1LQ9H019 292 aa16.83■□□□□ 0.28
SS18-201ENST00000269137 CYP46A1Q9Y6A2 500 aa16.83■□□□□ 0.28
SS18-201ENST00000269137 KIF13BQ9NQT8 1826 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 FGAP02671 866 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 GNAT2P19087 354 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 OLFM4Q6UX06 510 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 RUFY3Q7L099 469 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 NSUN4Q96CB9 384 aaKnown RBP16.82■□□□□ 0.28
SS18-201ENST00000269137 COA1Q9GZY4 146 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 TAF6LQ9Y6J9 622 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 DLEC1Q9Y238 1755 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 MBD4O95243 580 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 NAA16Q6N069 864 aaPredicted RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms