RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 CCNL1Q9UK58 526 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 CAMTA1Q9Y6Y1 1673 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 ERICH2A1L162 156 aa13.33□□□□□ -0.27
CLSTN3-201ENST00000266546 TTF1Q15361 905 aaPredicted RBP13.33□□□□□ -0.27
CLSTN3-201ENST00000266546 RBM8AQ9Y5S9 174 aaKnown RBP13.33□□□□□ -0.27
CLSTN3-201ENST00000266546 RAD50Q92878 1312 aa13.33□□□□□ -0.28
CLSTN3-201ENST00000266546 GABPB1Q06547 395 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-201ENST00000266546 BICDL1Q6ZP65 573 aa13.33□□□□□ -0.28
CLSTN3-201ENST00000266546 TRIM34Q9BYJ4 488 aa13.33□□□□□ -0.28
CLSTN3-201ENST00000266546 CCDC69A6NI79 296 aa13.33□□□□□ -0.28
CLSTN3-201ENST00000266546 SLC3A2P08195 630 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-201ENST00000266546 CPA1P15085 419 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 CASQ1P31415 396 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 TRIM28Q13263 835 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 IGKV5-2P06315 115 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 ZFYP08048 801 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 DNAI1Q9UI46 699 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 TRPM3Q9HCF6 1732 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 H7C1W4 665 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 DMTNQ08495 405 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 ATP2B3Q16720 1220 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 ARHGAP29Q52LW3 1261 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 FAM89AQ96GI7 184 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 LMO7Q8WWI1 1683 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 TFCP2Q12800 502 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 TNNI3KQ59H18 835 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 VPS53Q5VIR6 699 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 TPTE2Q6XPS3 522 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 NLRP3Q96P20 1036 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 ZBTB1Q9Y2K1 713 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 FPGT-TNNI3KV9GXZ4 949 aa13.32□□□□□ -0.28
CLSTN3-201ENST00000266546 CCT2P78371 535 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 NBPF5PQ86XG9 351 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 DEF6Q9H4E7 631 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 GPR108Q9NPR9 543 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 HMGB1P09429 215 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 C8orf76Q96K31 380 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 NEK1Q96PY6 1258 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 HMG20BQ9P0W2 317 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 U3KPZ7 1027 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 ALS2Q96Q42 1657 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 CRKLP46109 303 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 JAKMIP3Q5VZ66 844 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 AOPEPQ8N6M6 819 aa13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 CCDC47Q96A33 483 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-201ENST00000266546 PALLDQ8WX93 1383 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 CAVIN4Q5BKX8 364 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 STK11IPQ8N1F8 1099 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 ERO1AQ96HE7 468 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 GBP3Q9H0R5 595 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 LMAN1P49257 510 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 PDIA6Q15084 440 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 PHRF1Q9P1Y6 1649 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 CIAO1O76071 339 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 ANKRD18AQ8IVF6 992 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 TXLNBQ8N3L3 684 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 BRF1Q92994 677 aa13.3□□□□□ -0.28
CLSTN3-201ENST00000266546 UTYO14607 1347 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 GOLIM4O00461 696 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 CYP19A1P11511 503 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 TRAPPC3LQ5T215 181 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 FAM173BQ6P4H8 233 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 AMOTL1Q8IY63 956 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 PDLIM2Q96JY6 352 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 QTRT2Q9H974 415 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 SNRKQ9NRH2 765 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 XBP1P17861 261 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 GNG11P61952 73 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 KIF4BQ2VIQ3 1234 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 UTP14CQ5TAP6 766 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 DDX46Q7L014 1031 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 TMX1Q9H3N1 280 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 PALD1Q9ULE6 856 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 RGS12O14924 1447 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 NBPF26B4DH59 902 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 GNPATO15228 680 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 PPFIA3O75145 1194 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 IDH1O75874 414 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 NBPF14Q5TI25 921 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 ZNF772Q68DY9 489 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 NBPF10Q6P3W6 841 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 NBPF15Q8N660 670 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 CBX8Q9HC52 389 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 ARFGAP3Q9NP61 516 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 SNX14Q9Y5W7 946 aa13.29□□□□□ -0.28
CLSTN3-201ENST00000266546 NAP1L1P55209 391 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 FAM196AQ6ZSG2 479 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 NACAP1Q9BZK3 213 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 TNS2Q63HR2 1409 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 ATP5JP18859 108 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 ITGA6P23229 1130 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 ZNF75DP51815 510 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 RRP12Q5JTH9 1297 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 KLHDC4Q8TBB5 520 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 ISCA1Q9BUE6 129 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 KIF5CO60282 957 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 CDKL5O76039 1030 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 MAP3K12Q12852 859 aa13.28□□□□□ -0.28
CLSTN3-201ENST00000266546 ISM2Q6H9L7 571 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms