RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 SCRN1Q12765 414 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 KRT32Q14532 448 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 SF3A1Q15459 793 aaKnown RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 CT47A1Q5JQC4 288 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NUTM2GQ5VZR2 741 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 ADALQ6DHV7 355 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 ISM2Q6H9L7 571 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 AACSQ86V21 672 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 DPF2Q92785 391 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NEK1Q96PY6 1258 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 FSD1Q9BTV5 496 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 PHAXQ9H814 394 aaKnown RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 CACNA1FO60840 1977 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 FAM208AQ9UK61 1670 aaKnown RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 WASLO00401 505 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 PHACTR2O75167 634 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 MYCNP04198 464 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 CCDC172P0C7W6 258 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 GUCY1B3Q02153 619 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 HSP90AB2PQ58FF8 381 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 MICALL1Q8N3F8 863 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 CNNM3Q8NE01 707 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 KIFC2Q96AC6 838 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 PLEKHA4Q9H4M7 779 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 CXorf56Q9H5V9 222 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 POTEB2H3BUK9 544 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 IKBKBO14920 756 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 CPP00450 1065 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 PTPN21Q16825 1174 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 SWT1Q5T5J6 900 aaKnown RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 WWC2Q6AWC2 1192 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 SRGAP1Q7Z6B7 1085 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 TADA2BQ86TJ2 420 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 SMARCC2Q8TAQ2 1214 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 BAG1Q99933 345 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 LLPHQ9BRT6 129 aaKnown RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 BICC1Q9H694 974 aaKnown RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 PUF60Q9UHX1 559 aaKnown RBP8.32□□□□□ -1.08
CSDE1-201ENST00000261443 CEP83Q9Y592 693 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 OVOS2A0A0J9YW53 1432 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 OVOS2Q6IE36 1432 aa8.32□□□□□ -1.08
CSDE1-201ENST00000261443 DNAJC21Q5F1R6 531 aaKnown RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 TXNDC2Q86VQ3 553 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 TMEM139Q8IV31 216 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 VSTM4Q8IW00 320 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 PDILTQ8N807 584 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 BANK1Q8NDB2 785 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 FAM71BQ8TC56 605 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 CEP89Q96ST8 783 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 ANKZF1Q9H8Y5 726 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 SUGCTQ9HAC7 445 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 SNRKQ9NRH2 765 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 L1RE1Q9UN81 338 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 N4BP2Q86UW6 1770 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 A0A1W2PQ27 194 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 A0A1W2PQ64 194 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 A0A1W2PQD8 194 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 PTPDC1A2A3K4 754 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 TMEM232C9JQI7 657 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 PPFIA4O75335 1185 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 USP5P45974 858 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 KARSQ15046 597 aaKnown RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 TOGARAM2Q6ZUX3 1019 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 MSL3Q8N5Y2 521 aaKnown RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 NSUN7Q8NE18 718 aaKnown RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 DNAAF4Q8WXU2 420 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 LRRC2Q9BYS8 371 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 ABCB6Q9NP58 842 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 FMN2Q9NZ56 1722 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 A0A087WUV0 522 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 CUTAO60888 179 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 WDHD1O75717 1129 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 STK38Q15208 465 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 SKIDA1Q1XH10 827 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 HDGFL1Q5TGJ6 251 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 ZNF589Q86UQ0 364 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-201ENST00000261443 PNKPQ96T60 521 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 HSD3B7Q9H2F3 369 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 ACBD3Q9H3P7 528 aa8.31□□□□□ -1.08
CSDE1-201ENST00000261443 MAP3K19Q56UN5 1328 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 ZNF202O95125 648 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 MAP2K2P36507 400 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 GSCP56915 257 aaPredicted RBP8.3□□□□□ -1.08
CSDE1-201ENST00000261443 CASP8Q14790 479 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 TAF7Q15545 349 aaPredicted RBP8.3□□□□□ -1.08
CSDE1-201ENST00000261443 CEP112Q8N8E3 955 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 ANKRD20A12PQ8NF67 263 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 ZNF622Q969S3 477 aaKnown RBP eCLIP8.3□□□□□ -1.08
CSDE1-201ENST00000261443 BOLA2Q9H3K6 86 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 FAM204AQ9H8W3 233 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 RAB21Q9UL25 225 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 PA2G4Q9UQ80 394 aaKnown RBP8.3□□□□□ -1.08
CSDE1-201ENST00000261443 STX10O60499 249 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 PFKFB2O60825 505 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 PPFIA3O75145 1194 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 EIF5P55010 431 aaKnown RBP8.3□□□□□ -1.08
CSDE1-201ENST00000261443 MYL5Q02045 173 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 MTX1Q13505 466 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 NUDT16Q96DE0 195 aaKnown RBP8.3□□□□□ -1.08
CSDE1-201ENST00000261443 FAM107BQ9H098 131 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms