RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 PABPC4Q13310 644 aaKnown RBP eCLIP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 CWF19L1Q69YN2 538 aaKnown RBP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 SLC30A9Q6PML9 568 aa8.86□□□□□ -0.99
GPNMB-201ENST00000258733 RNF168Q8IYW5 571 aaPredicted RBP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 ZC3H15Q8WU90 426 aaKnown RBP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 CTNNBL1Q8WYA6 563 aaPredicted RBP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 CUL5Q93034 780 aa8.86□□□□□ -0.99
GPNMB-201ENST00000258733 CABS1Q96KC9 395 aa8.86□□□□□ -0.99
GPNMB-201ENST00000258733 UIMC1Q96RL1 719 aa8.86□□□□□ -0.99
GPNMB-201ENST00000258733 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 C6orf203Q9P0P8 240 aaPredicted RBP8.86□□□□□ -0.99
GPNMB-201ENST00000258733 GOLGA6L10A6NI86 522 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 SLC26A4O43511 780 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 SH3BGRP55822 239 aaPredicted RBP8.85□□□□□ -0.99
GPNMB-201ENST00000258733 DMPKQ09013 629 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 VPS53Q5VIR6 699 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 WHAMMQ8TF30 809 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 LRRCC1Q9C099 1032 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 CCDC68Q9H2F9 335 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 DHX36Q9H2U1 1008 aaKnown RBP8.85□□□□□ -0.99
GPNMB-201ENST00000258733 IFT122Q9HBG6 1241 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 QPCTLQ9NXS2 382 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 ZNF510Q9Y2H8 683 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 FAN1Q9Y2M0 1017 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 IKBKGQ9Y6K9 419 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 MTA2O94776 668 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 ABL1P00519 1130 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 SLC4A2P04920 1241 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 LONRF1Q17RB8 773 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 NANOGNBQ7Z5D8 188 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 LCA5Q86VQ0 697 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 ARHGAP45Q92619 1136 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 JAKMIP2Q96AA8 810 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 ERO1AQ96HE7 468 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 ZCCHC17Q9NP64 241 aaKnown RBP8.85□□□□□ -0.99
GPNMB-201ENST00000258733 ZNF215Q9UL58 517 aaPredicted RBP8.85□□□□□ -0.99
GPNMB-201ENST00000258733 CARMIL1Q5VZK9 1371 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 DISP3Q9P2K9 1392 aa8.85□□□□□ -0.99
GPNMB-201ENST00000258733 NPM3O75607 178 aaKnown RBP8.84□□□□□ -0.99
GPNMB-201ENST00000258733 CLK1P49759 484 aaKnown RBP8.84□□□□□ -0.99
GPNMB-201ENST00000258733 USP11P51784 963 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 EIF4A2Q14240 407 aaKnown RBP8.84□□□□□ -0.99
GPNMB-201ENST00000258733 CEP135Q66GS9 1140 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 GALNT17Q6IS24 598 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 CENPTQ96BT3 561 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 CD248Q9HCU0 757 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 NLRP2Q9NX02 1062 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 SETD5Q9C0A6 1442 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 ZEB2O60315 1214 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 MTRF1O75570 445 aaKnown RBP8.84□□□□□ -0.99
GPNMB-201ENST00000258733 G3BP1Q13283 466 aaKnown RBP eCLIP8.84□□□□□ -0.99
GPNMB-201ENST00000258733 TRIM29Q14134 588 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 MYBPC3Q14896 1274 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 CCDC150Q8NCX0 1101 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 LMBR1Q8WVP7 490 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.84□□□□□ -0.99
GPNMB-201ENST00000258733 PYCARDQ9ULZ3 195 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 GCC2Q8IWJ2 1684 aa8.84□□□□□ -0.99
GPNMB-201ENST00000258733 RNF8O76064 485 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 CCDC159P0C7I6 412 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 ALOX15P16050 662 aaPredicted RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 CLCN6P51797 869 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 BTG3Q14201 252 aaPredicted RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 ATF7IPQ6VMQ6 1270 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 C14orf80Q86SX3 495 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 DCLK2Q8N568 766 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 ANKRD24Q8TF21 1146 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 PRELID1Q9Y255 219 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 PCDHGC5Q9Y5F6 944 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 RRM1P23921 792 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 GCLCP48506 637 aaPredicted RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 LIG3P49916 1009 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 INHBCP55103 352 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 ROR2Q01974 943 aaKnown RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 TAF7Q15545 349 aaPredicted RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 ALDH1L2Q3SY69 923 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 SYCP3Q8IZU3 236 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 CHCHD4Q8N4Q1 142 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 ALS2CR12Q96Q35 445 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 OSBPL9Q96SU4 736 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 TMEM221A6NGB7 291 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 LSM1O15116 133 aaKnown RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 CYP27B1O15528 508 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 HIP1RO75146 1068 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 CUL4BQ13620 913 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 SAMD14Q8IZD0 417 aaPredicted RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 MAB21L3Q8N8X9 362 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 NGDNQ8NEJ9 315 aaKnown RBP8.83□□□□□ -1
GPNMB-201ENST00000258733 TAOK3Q9H2K8 898 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.83□□□□□ -1
GPNMB-201ENST00000258733 ATP6V0A2Q9Y487 856 aa8.83□□□□□ -1
GPNMB-201ENST00000258733 LINC00854A0A1B0GVQ3 168 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 YY1P25490 414 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 GRIN2BQ13224 1484 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 ISM2Q6H9L7 571 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 ANKRD13DQ6ZTN6 518 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 SMARCC1Q92922 1105 aaPredicted RBP8.82□□□□□ -1
GPNMB-201ENST00000258733 RAB3GAP2Q9H2M9 1393 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 BATF3Q9NR55 127 aa8.82□□□□□ -1
GPNMB-201ENST00000258733 POLA1P09884 1462 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms