RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 HAND2P61296 217 aa9.74□□□□□ -0.85
VAMP3-201ENST00000054666 EXOSC10Q01780 885 aaKnown RBP9.74□□□□□ -0.85
VAMP3-201ENST00000054666 TRDNQ13061 729 aa9.74□□□□□ -0.85
VAMP3-201ENST00000054666 TTLL5Q6EMB2 1281 aa9.74□□□□□ -0.85
VAMP3-201ENST00000054666 KLHL34Q8N239 644 aa9.74□□□□□ -0.85
VAMP3-201ENST00000054666 NCOA7Q8NI08 942 aa9.74□□□□□ -0.85
VAMP3-201ENST00000054666 DDX11Q96FC9 970 aa9.74□□□□□ -0.85
VAMP3-201ENST00000054666 ZSCAN16Q9H4T2 348 aaPredicted RBP9.74□□□□□ -0.85
VAMP3-201ENST00000054666 PTPDC1A2A3K4 754 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 NTSR2O95665 410 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 FGAP02671 866 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 FGFR2P21802 821 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 MCM5P33992 734 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 FAM98CQ17RN3 349 aaKnown RBP9.73□□□□□ -0.85
VAMP3-201ENST00000054666 NSUN7Q8NE18 718 aaKnown RBP9.73□□□□□ -0.85
VAMP3-201ENST00000054666 SMARCC2Q8TAQ2 1214 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 ZNF274Q96GC6 653 aaPredicted RBP9.73□□□□□ -0.85
VAMP3-201ENST00000054666 SPATA32Q96LK8 384 aa9.73□□□□□ -0.85
VAMP3-201ENST00000054666 CDC5LQ99459 802 aaKnown RBP9.73□□□□□ -0.85
VAMP3-201ENST00000054666 MAP3K12Q12852 859 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 CLEC4GQ6UXB4 293 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 FBXL16Q8N461 479 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 RNF214Q8ND24 703 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 HELBQ8NG08 1087 aaPredicted RBP9.72□□□□□ -0.85
VAMP3-201ENST00000054666 AIDAQ96BJ3 306 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 C8orf37Q96NL8 207 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 PIH1D3Q9NQM4 214 aaKnown RBP9.72□□□□□ -0.85
VAMP3-201ENST00000054666 ZNF532Q9HCE3 1301 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 A0A0G2JLW4 131 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 ESPNB1AK53 854 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 PRC1O43663 620 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 DHX16O60231 1041 aaKnown RBP9.72□□□□□ -0.85
VAMP3-201ENST00000054666 APPP05067 770 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 PDE6AP16499 860 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 CCT2P78371 535 aaKnown RBP9.72□□□□□ -0.85
VAMP3-201ENST00000054666 VPS72Q15906 364 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 NAA16Q6N069 864 aaPredicted RBP9.72□□□□□ -0.85
VAMP3-201ENST00000054666 TTC6Q86TZ1 520 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 SPATA5Q8NB90 893 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 NGLY1Q96IV0 654 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 RRAGDQ9NQL2 400 aaPredicted RBP9.72□□□□□ -0.85
VAMP3-201ENST00000054666 WDR19Q8NEZ3 1342 aa9.72□□□□□ -0.85
VAMP3-201ENST00000054666 SCN7AQ01118 1682 aa9.71□□□□□ -0.85
VAMP3-201ENST00000054666 FOXP2O15409 715 aa9.71□□□□□ -0.85
VAMP3-201ENST00000054666 KCNQ2O43526 872 aa9.71□□□□□ -0.85
VAMP3-201ENST00000054666 CHST3Q7LGC8 479 aa9.71□□□□□ -0.85
VAMP3-201ENST00000054666 SEC31BQ9NQW1 1179 aa9.71□□□□□ -0.85
VAMP3-201ENST00000054666 CFAP45Q9UL16 551 aa9.71□□□□□ -0.85
VAMP3-201ENST00000054666 DOCK2Q92608 1830 aa9.71□□□□□ -0.86
VAMP3-201ENST00000054666 GOLGA8BA8MQT2 603 aa9.71□□□□□ -0.86
VAMP3-201ENST00000054666 PDIA3P30101 505 aaKnown RBP9.71□□□□□ -0.86
VAMP3-201ENST00000054666 RESTQ13127 1097 aa9.71□□□□□ -0.86
VAMP3-201ENST00000054666 FAM173BQ6P4H8 233 aa9.71□□□□□ -0.86
VAMP3-201ENST00000054666 MB21D2Q8IYB1 491 aaPredicted RBP9.71□□□□□ -0.86
VAMP3-201ENST00000054666 WWC3Q9ULE0 1092 aa9.71□□□□□ -0.86
VAMP3-201ENST00000054666 CNTNAP4Q9C0A0 1308 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 KLF18A0A0U1RQI7 1052 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 UBAP1LF5GYI3 381 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 CPLX1O14810 134 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 RGL2O15211 777 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 CLCN1P35523 988 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 RASGRF1Q13972 1273 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 LEO1Q8WVC0 666 aaPredicted RBP9.7□□□□□ -0.86
VAMP3-201ENST00000054666 ZMYM6O95789 1325 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 SALL1Q9NSC2 1324 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 MYO5AQ9Y4I1 1855 aaKnown RBP9.7□□□□□ -0.86
VAMP3-201ENST00000054666 CARMIL3Q8ND23 1372 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 ADRA2BP18089 450 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 MSNP26038 577 aaKnown RBP9.7□□□□□ -0.86
VAMP3-201ENST00000054666 GTF2E1P29083 439 aaPredicted RBP9.7□□□□□ -0.86
VAMP3-201ENST00000054666 EVCP57679 992 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 CHRNDQ07001 517 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 UVSSAQ2YD98 709 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 HS1BP3Q53T59 392 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 ANKRD18AQ8IVF6 992 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 MAGEB6Q8N7X4 407 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 LINC00116Q8NCU8 138 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 BICD2Q8TD16 824 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 PDLIM2Q96JY6 352 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 NAPBQ9H115 298 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 NUP62CLQ9H1M0 184 aa9.7□□□□□ -0.86
VAMP3-201ENST00000054666 NCOA5Q9HCD5 579 aaKnown RBP9.7□□□□□ -0.86
VAMP3-201ENST00000054666 TCRBV5S4A2TA0A5A2 114 aa9.69□□□□□ -0.86
VAMP3-201ENST00000054666 CTDNEP1O95476 244 aa9.69□□□□□ -0.86
VAMP3-201ENST00000054666 FOSBP53539 338 aa9.69□□□□□ -0.86
VAMP3-201ENST00000054666 ZNF396Q96N95 335 aaPredicted RBP9.69□□□□□ -0.86
VAMP3-201ENST00000054666 DDX19AQ9NUU7 478 aaKnown RBP9.69□□□□□ -0.86
VAMP3-201ENST00000054666 MYH15Q9Y2K3 1946 aa9.69□□□□□ -0.86
VAMP3-201ENST00000054666 BCL9LQ86UU0 1499 aa9.69□□□□□ -0.86
VAMP3-201ENST00000054666 MBD4O95243 580 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 CCDC192P0DO97 292 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 GNAT2P19087 354 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 MAP3K11Q16584 847 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 ATL3Q6DD88 541 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 ZSCAN30Q86W11 494 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 NACAP1Q9BZK3 213 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 NYXQ9GZU5 481 aa9.68□□□□□ -0.86
VAMP3-201ENST00000054666 GNL3LQ9NVN8 582 aaKnown RBP9.68□□□□□ -0.86
VAMP3-201ENST00000054666 TFIP11Q9UBB9 837 aaKnown RBP9.68□□□□□ -0.86
VAMP3-201ENST00000054666 GIMAP6Q6P9H5 292 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms