RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 LSM6P62312 80 aaKnown RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 LY6G5CQ5SRR4 150 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 HSD11B1LQ7Z5J1 315 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 NOXO1Q8NFA2 376 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 LSM10Q969L4 123 aaKnown RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 GALMQ96C23 342 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 KLHDC7BQ96G42 594 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 COMMD5Q9GZQ3 224 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 CES1P1Q9UKY3 287 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 FRG2CA6NGY1 282 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 NPIPB13A6NJU9 1138 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 SNURFLB1AK76 121 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 NPIPB4C9JG80 1138 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 TUSC2O75896 110 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 FTH1P19P0C7X4 201 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF346Q9UL40 294 aaKnown RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 IL33O95760 270 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 HINT1P49773 126 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 LAIR2Q6ISS4 152 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM208Q9BTX3 173 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 QTRT1Q9BXR0 403 aaKnown RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 CYSLTR1Q9Y271 337 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 DPRXA6NFQ7 191 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 FBLL1A6NHQ2 334 aaKnown RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 GLRA1P23415 457 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ZP1P60852 638 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 CST6Q15828 149 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 SMIM21Q3B7S5 101 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 DCAF12L2Q5VW00 463 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 GATSQ8NAP1 163 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ADOQ96SZ5 270 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM106BQ9NUM4 274 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 DNAJC25-GNG10A0A024R161 153 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 HCRTO43612 131 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 SLC25A17O43808 307 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 RGRP47804 291 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM249Q2WGJ8 235 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 TCF23Q7RTU1 214 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 LINC01465Q8N7H1 131 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 C1QTNF6Q9BXI9 259 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 LRP12Q9Y561 859 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ATAD5Q96QE3 1844 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1W2PRS3 328 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 OR5B21A6NL26 309 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 GPX4P36969 197 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 RND3P61587 244 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 NFAM1Q8NET5 270 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 PIGCQ92535 297 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 MRGPRX1Q96LB2 322 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ZMAT3Q9HA38 289 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 MRM2Q9UI43 246 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 DTX4Q9Y2E6 619 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 H0Y980 276 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 BCAT2O15382 392 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 COX7A2P2O60397 106 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 DYNLT3P51808 116 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 EXOSC7Q15024 291 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CARD17Q5XLA6 110 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ASTLQ6HA08 431 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 PARS2Q7L3T8 475 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 C14orf144Q96I85 54 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 POM121L2Q96KW2 1035 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM56Q96MV1 263 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 FAM173AQ9BQD7 235 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 VN1R1Q9GZP7 353 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 OBP2AQ9NY56 170 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ADAMTS7Q9UKP4 1686 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1W2PR48 441 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 BMPR1BO00238 502 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 GJB5O95377 273 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 OR10J3Q5JRS4 329 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 KCNE4Q8WWG9 221 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SLC25A38Q96DW6 304 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 PEX11GQ96HA9 241 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SLC7A10Q9NS82 523 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 EFSO43281 561 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ANKRD34CP0C6C1 535 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 PIAS3Q9Y6X2 628 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CACNA1SQ13698 1873 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TRAV9-2A0A087WT02 112 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SRP19P09132 144 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CD70P32970 193 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 MAS1LP35410 378 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TIAL1Q01085 375 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 PRDX4Q13162 271 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 C10orf91Q5T1B1 145 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 WDR25Q64LD2 544 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 WDR31Q8NA23 367 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 JSRP1Q96MG2 331 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CHTOPQ9Y3Y2 248 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ARSAP15289 507 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 OR1C1Q15619 314 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TWIST1Q15672 202 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ZDHHC23Q8IYP9 409 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ARHGAP5-AS1Q96IT6 56 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1W2PQD3 144 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 NXPH2O95156 264 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TDGF1P3P51864 188 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM164Q5U3C3 297 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 DEFB128Q7Z7B8 93 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms