RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RPL31P62899 125 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 HMGN5P82970 282 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 DNAJC3Q13217 504 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 DYNC1I2Q13409 638 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 HTR4Q13639 388 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 WDR43Q15061 677 aaKnown RBP eCLIP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR8G1Q15617 311 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZCWPW2Q504Y3 356 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 BEX5Q5H9J7 111 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TPRG1LQ5T0D9 272 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FAM27D1Q5T7N8 215 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ELP2Q6IA86 826 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ERICH5Q6P6B1 374 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 EIF3MQ7L2H7 374 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CENPQQ7L2Z9 268 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FAM19A3Q7Z5A8 133 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FAM19A1Q7Z5A9 133 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 LINC00596Q86U02 117 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 NIT1Q86X76 327 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CYP4Z2PQ8N1L4 340 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC25A45Q8N413 288 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CCNYL1Q8N7R7 359 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 INO80EQ8NBZ0 244 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PROKR2Q8NFJ6 384 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CCDC148Q8NFR7 591 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR11G2Q8NGC1 345 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR52K1Q8NGK4 314 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR4C16Q8NGL9 310 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR6K6Q8NGW6 343 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR10Z1Q8NGY1 313 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR4K13Q8NH42 304 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR4A5Q8NH83 315 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CD200R1Q8TD46 325 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 C10orf105Q8TEF2 133 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 DCANP1Q8TF63 244 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 GLYATL2Q8WU03 294 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TFGQ92734 400 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PEX13Q92968 403 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TOP1MTQ969P6 601 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MCUR1Q96AQ8 359 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FAM131CQ96AQ9 280 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 DDIT4LQ96D03 193 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FMC1Q96HJ9 113 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 REEP6Q96HR9 211 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 RILPQ96NA2 401 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 YPEL4Q96NS1 127 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 BIRC8Q96P09 236 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 QKIQ96PU8 341 aaKnown RBP eCLIP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR52B2Q96RD2 323 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TBX5Q99593 518 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 C11orf70Q9BRQ4 267 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 UPK3BQ9BT76 320 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZNF426Q9BUY5 554 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TMED9Q9BVK6 235 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TIMM21Q9BVV7 248 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CHID1Q9BWS9 393 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MRPL20Q9BYC9 149 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC19A3Q9BZV2 496 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SRRQ9GZT4 340 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 COA1Q9GZY4 146 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ARL6Q9H0F7 186 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ALX4Q9H161 411 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MFSD1Q9H3U5 465 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 POMKQ9H5K3 350 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 WDR55Q9H6Y2 383 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TDRD3Q9H7E2 651 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 C8orf33Q9H7E9 229 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 RHOFQ9HBH0 211 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 VCX3AQ9NNX9 186 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PXMP2Q9NR77 195 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MCUBQ9NWR8 336 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PEF1Q9UBV8 284 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 NAGKQ9UJ70 344 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ANXA10Q9UJ72 324 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC7A11Q9UPY5 501 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 RHBDD3Q9Y3P4 386 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ORC6Q9Y5N6 252 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MINOS1-NBL1R4GNA1 71 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 URGCP-MRPS24S4R325 110 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 COL7A1Q02388 2944 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CACNA1BQ00975 2339 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SIGLEC1Q9BZZ2 1709 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 KIAA2026Q5HYC2 2103 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 BDP1A6H8Y1 2624 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MAST4O15021 2626 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZNF462Q96JM2 2506 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 MACF1Q9UPN3 7388 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 BRWD1Q9NSI6 2320 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TNIKQ9UKE5 1360 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 STRCP1A6NGW2 1772 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TRGV2A0A075B6R0 118 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SYNJ2BP-COX16A0A087WUM0 186 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LOC100653049A0A140TA62 436 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PGPA6NDG6 321 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GOLGA8JA6NMD2 632 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CD300LBA8K4G0 201 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C8orf87E5RJ46 101 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 FNDC10F2Z333 226 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GOLGA8TH3BQL2 631 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 K7EN84 100 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms