RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ZNF136P52737 540 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 CSNK2A1P68400 391 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF117Q03924 483 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 SLAQ13239 276 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 RNF44Q7L0R7 432 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF440Q8IYI8 595 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 LGI3Q8N145 548 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 C2orf73Q8N5S3 287 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ST6GALNAC3Q8NDV1 305 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 CSNK2A3Q8NEV1 391 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 OR5B3Q8NH48 314 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ATP6V0BQ99437 205 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ZDHHC11Q9H8X9 412 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 MRPS28Q9Y2Q9 187 aaKnown RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 RNF115Q9Y4L5 304 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 SPTBP11277 2137 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ODAMA1E959 279 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 B4DGG1 531 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 SDCBPO00560 298 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 TNFRSF10CO14798 259 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 NDUFS4O43181 175 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 CYC1P08574 325 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 SRP14P37108 136 aaKnown RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 POLR2LP62875 67 aaKnown RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF74Q16587 644 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 LY6G5CQ5SRR4 150 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 MRPL2Q5T653 305 aaKnown RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 NRSN1Q8IZ57 195 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 CADM4Q8NFZ8 388 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 OR2Y1Q8NGV0 311 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 ZNRF4Q8WWF5 429 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 RASD2Q96D21 266 aa5.98□□□□□ -1.45
SCN1A-213ENST00000636759 RTBDNQ9BSG5 229 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-213ENST00000636759 SPENQ96T58 3664 aaKnown RBP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 DUXBA0A1W2PPF3 345 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 GRIFINA4D1Z8 144 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 VSTM5A8MXK1 200 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 C4orf51C9J302 202 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 NUPR1O60356 82 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 YPEL1O60688 119 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 SAP30O75446 220 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 MPZL1O95297 269 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZIC2O95409 532 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 HLA-DQA2P01906 255 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 CEBPBP17676 345 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 EMP2P54851 167 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 SEC13P55735 322 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 PPP1CBP62140 327 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 LCN2P80188 198 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 EWSR1Q01844 656 aaKnown RBP eCLIP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF684Q5T5D7 378 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 AMMECR1LQ6DCA0 310 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 PET117Q6UWS5 81 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 LCN15Q6UWW0 184 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 C1orf122Q6ZSJ8 110 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 CYP2G1PQ6ZSU1 146 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 PNKDQ8N490 385 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 RHBDD1Q8TEB9 315 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 YPEL2Q96QA6 119 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 P2RX4Q99571 388 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ELOVL3Q9HB03 270 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ABI3Q9P2A4 366 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 SLC22A13Q9Y226 551 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 SLC5A6Q9Y289 635 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 KLHDC2Q9Y2U9 406 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 LILRA1O75019 489 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF217O75362 1048 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 HLA-HP01893 362 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 DBIP07108 87 aaKnown RBP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 SCGB1A1P11684 91 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 CRISP2P16562 243 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 TAS2R46P59540 309 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 OR1N2Q8NGR9 330 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 TSSK2Q96PF2 358 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 NICN1Q9BSH3 213 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 WDR76Q9H967 626 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 A0A1W2PPV9 198 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 HSPB2A8KAH6 182 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 TYMSP04818 313 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF20P17024 532 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 DUSP1P28562 367 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 MTCP1P56278 107 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 NTHL1P78549 312 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 HSPB2Q16082 182 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 HIST3H3Q16695 136 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 LRRC10Q5BKY1 277 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 FAM78BQ5VT40 261 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 PARS2Q7L3T8 475 aaKnown RBP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 VASH2Q86V25 355 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 OR2C3Q8N628 320 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 LINC00615Q96LM1 132 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 AP1S3Q96PC3 154 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 RASL10BQ96S79 203 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ST6GALNAC5Q9BVH7 336 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 VN1R1Q9GZP7 353 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF665Q9H7R5 613 aa5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF703Q9H7S9 590 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-213ENST00000636759 ZNF780BQ9Y6R6 833 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms