RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DCST2Q5T1A1 773 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 C6orf183Q5T699 404 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 C9orf66Q5T8R8 295 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 C22orf42Q6IC83 251 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 C3orf33Q6P1S2 294 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 MED27Q6P2C8 311 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 RNF165Q6ZSG1 346 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 GPRIN3Q6ZVF9 776 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 HDDC2Q7Z4H3 204 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 Q8N2B8 174 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 C15orf54Q8N8G6 183 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 FBXO36Q8NEA4 188 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 OR51D1Q8NGF3 324 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 OR9A2Q8NGT5 310 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 OR4C3Q8NH37 302 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 OR6S1Q8NH40 331 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 SLC7A13Q8TCU3 470 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF675Q8TD23 568 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 FCAMRQ8WWV6 532 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 MRGPRFQ96AM1 343 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF524Q96C55 264 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 CCDC124Q96CT7 223 aaKnown RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 CLCC1Q96S66 551 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 UQCC2Q9BRT2 126 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 BARHL1Q9BZE3 327 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 NDEL1Q9GZM8 345 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 IKZF5Q9H5V7 419 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 Q9HAA7 133 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 NANSQ9NR45 359 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 SIRT7Q9NRC8 400 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ZFP57Q9NU63 452 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 TAS2R9Q9NYW1 312 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 BFARQ9NZS9 450 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 FBXO5Q9UKT4 447 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 AK6Q9Y3D8 172 aaKnown RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 DNAH6Q9C0G6 4158 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 IGLV5-45A0A087WSX0 123 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 A0A087X0T9 212 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 TMEM120BA0PK00 339 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF99A8MXY4 864 aaPredicted RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ATP5LO75964 103 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 IGHG4P01861 327 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 HLA-HP01893 362 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 H2AFZP0C0S5 128 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 FAM228BP0C875 321 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 SLC2A2P11168 524 aaPredicted RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CD79AP11912 226 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF250P15622 560 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 C4BPBP20851 252 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 FASP25445 335 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 GABRA3P34903 492 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 SAA4P35542 130 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 SLC1A2P43004 574 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 VDAC2P45880 294 aaPredicted RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 NPBWR2P48146 333 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CX3CR1P49238 355 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 FUT6P51993 359 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 OR2B6P58173 313 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ARF6P62330 175 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 GUCY2DQ02846 1103 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF117Q03924 483 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 RBBP4Q09028 425 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 PSG3Q16557 428 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 MOGQ16653 247 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 GSG1Q2KHT4 349 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 RNLSQ5VYX0 342 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 WDR25Q64LD2 544 aaPredicted RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 LGALS9CQ6DKI2 356 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 SLC48A1Q6P1K1 146 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 LRRC74BQ6ZQY2 392 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 C19orf35Q6ZS72 473 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 FRA10AC1Q70Z53 315 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 H2AFVQ71UI9 128 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 SLC16A14Q7RTX9 510 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 TSEN54Q7Z6J9 526 aaKnown RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CATSPERDQ86XM0 798 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 NUDCD3Q8IVD9 361 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 LRRC8AQ8IWT6 810 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF283Q8N7M2 679 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF565Q8N9K5 539 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF383Q8NA42 475 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 OR1B1Q8NGR6 318 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 OR6F1Q8NGZ6 308 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ITLN1Q8WWA0 313 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CACNG8Q8WXS5 425 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 C11orf40Q8WZ69 217 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 RORBQ92753 470 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 TNFRSF14Q92956 283 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CNRIP1Q96F85 164 aaPredicted RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 HINT2Q9BX68 163 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CDCA4Q9BXL8 241 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 NSRP1Q9H0G5 558 aaKnown RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 RETNQ9HD89 108 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ZDHHC18Q9NUE0 388 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 TAS2R13Q9NYV9 303 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 ADA2Q9NZK5 511 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 SENP1Q9P0U3 644 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 CES1P1Q9UKY3 287 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 RBMX2Q9Y388 322 aaKnown RBP3.31□□□□□ -1.88
LINC00540-201ENST00000611481 OARD1Q9Y530 152 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms