RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 Q9H521 79 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 IFT22Q9H7X7 185 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 POMT1Q9Y6A1 747 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 A0A0U1RQK1 487 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 FUOMA2VDF0 154 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 MAGEA13PA6NCF6 341 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 SIRPB1O00241 398 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 SLC33A1O00400 549 aaPredicted RBP13.21□□□□□ -0.29
LSM4-206ENST00000600289 MELTFP08582 738 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 ZNF728P0DKX0 622 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 CCL3L1P16619 93 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 COMPP49747 757 aaPredicted RBP13.21□□□□□ -0.29
LSM4-206ENST00000600289 SNU13P55769 128 aaKnown RBP13.21□□□□□ -0.29
LSM4-206ENST00000600289 P2RX3P56373 397 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 EDDM3BP56851 147 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 ERVFRD-1P60508 538 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 DEFA6Q01524 100 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 PAX5Q02548 391 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 KLRD1Q13241 179 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 RSU1Q15404 277 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 TRAM1Q15629 374 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 MIDNQ504T8 468 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 LINC00596Q86U02 117 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 PHYHIPQ92561 330 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 SLC25A28Q96A46 364 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 ZNF714Q96N38 554 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 CHST6Q9GZX3 395 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 METTL9Q9H1A3 318 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 PCDHB16Q9NRJ7 776 aa13.21□□□□□ -0.29
LSM4-206ENST00000600289 SF3B6Q9Y3B4 125 aaKnown RBP13.21□□□□□ -0.29
LSM4-206ENST00000600289 TMEM89A2RUT3 159 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 HOXA3O43365 443 aaPredicted RBP13.2□□□□□ -0.3
LSM4-206ENST00000600289 ZNF44P15621 663 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 CPEP16870 476 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 PSMA1P25786 263 aaKnown RBP13.2□□□□□ -0.3
LSM4-206ENST00000600289 GPR176Q14439 515 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 EDDM3AQ14507 147 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 ACSM3Q53FZ2 586 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 CORO2AQ92828 525 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 ZDHHC16Q969W1 377 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 S100A13Q99584 98 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 UQCC2Q9BRT2 126 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 NCOR1P1Q9H4R4 102 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 HEXA-AS1Q9H8Q6 139 aa13.2□□□□□ -0.3
LSM4-206ENST00000600289 UBE2J1Q9Y385 318 aaPredicted RBP13.2□□□□□ -0.3
LSM4-206ENST00000600289 RYR3Q15413 4870 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 A0A1W2PPK0 400 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 MEGF11A6BM72 1044 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 DEGS1O15121 323 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 FBP1P09467 338 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 SAA4P35542 130 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 KCNJ3P48549 501 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 DLX1P56177 255 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 RBM11P57052 281 aaKnown RBP13.19□□□□□ -0.3
LSM4-206ENST00000600289 MPV17LQ2QL34 196 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 ZNF367Q7RTV3 350 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 PDZD9Q8IXQ8 264 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 OSR2Q8N2R0 312 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 SSMEM1Q8WWF3 244 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 MRPS24Q96EL2 167 aaKnown RBP13.19□□□□□ -0.3
LSM4-206ENST00000600289 TMED9Q9BVK6 235 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 YTHDF1Q9BYJ9 559 aaKnown RBP13.19□□□□□ -0.3
LSM4-206ENST00000600289 CCDC90BQ9GZT6 254 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 ZNRD1Q9P1U0 126 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 VWFP04275 2813 aa13.19□□□□□ -0.3
LSM4-206ENST00000600289 CMYA5Q8N3K9 4069 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 TRAV24A0A0B4J272 114 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 CDRT1O95170 752 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 HTR3BO95264 441 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 CSTBP04080 98 aaKnown RBP13.18□□□□□ -0.3
LSM4-206ENST00000600289 MAS1P04201 325 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 UCHL1P09936 223 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 IGHV1-8P0DP01 117 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 HKR1P10072 659 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 CD37P11049 281 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 IER3P46695 156 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 GP2P55259 537 aaKnown RBP13.18□□□□□ -0.3
LSM4-206ENST00000600289 RPL15P61313 204 aaKnown RBP13.18□□□□□ -0.3
LSM4-206ENST00000600289 ACTG1P63261 375 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 PIGYQ3MUY2 71 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 LIPKQ5VXJ0 399 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 OR10K1Q8NGX5 313 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 COQ2Q96H96 371 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 MGLLQ99685 303 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 NKX3-1Q99801 234 aaPredicted RBP13.18□□□□□ -0.3
LSM4-206ENST00000600289 PPA2Q9H2U2 334 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 ACOT13Q9NPJ3 140 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 TAS2R3Q9NYW6 316 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 ING4Q9UNL4 249 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 ST3GAL6Q9Y274 331 aa13.18□□□□□ -0.3
LSM4-206ENST00000600289 MRPS28Q9Y2Q9 187 aaKnown RBP13.18□□□□□ -0.3
LSM4-206ENST00000600289 ODF3BA8MYP8 253 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 CLPXO76031 633 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 GTF2F2P13984 249 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 PRB3Q04118 309 aaPredicted RBP13.17□□□□□ -0.3
LSM4-206ENST00000600289 INSL4Q14641 139 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 LRRTM1Q86UE6 522 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 JAGN1Q8N5M9 183 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 TPRX1Q8N7U7 411 aa13.17□□□□□ -0.3
LSM4-206ENST00000600289 BEND2Q8NDZ0 799 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms