RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 HSD17B12Q53GQ0 312 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 METAP1DQ6UB28 335 aaPredicted RBP12.45□□□□□ -0.42
LIG1-219ENST00000600055 GLIPR1L1Q6UWM5 242 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 RBMS3Q6XE24 437 aaKnown RBP12.45□□□□□ -0.42
LIG1-219ENST00000600055 OSR2Q8N2R0 312 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 OR51T1Q8NGJ9 327 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 PPP1R35Q8TAP8 253 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 TBC1D15Q8TC07 691 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 C1orf147Q96MC9 270 aaPredicted RBP12.45□□□□□ -0.42
LIG1-219ENST00000600055 S100A13Q99584 98 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 TCF7L1Q9HCS4 588 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 TRAV24A0A0B4J272 114 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 A0A0U1RQK1 487 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 A0A1W2PPH5 198 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 TNFAIP8O95379 198 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 CSTBP04080 98 aaKnown RBP12.44□□□□□ -0.42
LIG1-219ENST00000600055 SRMP19623 302 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 GLIPR1P48060 266 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 FABP5Q01469 135 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 AESQ08117 197 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 BAMBIQ13145 260 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 IL13RA2Q14627 380 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 AWAT2Q6E213 333 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 CDH26Q8IXH8 852 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 SVOPQ8N4V2 548 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 NKAIN3Q8N8D7 197 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 CHST4Q8NCG5 386 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 COQ2Q96H96 371 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 C19orf24Q9BVV8 132 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 UNKLQ9H9P5 680 aaKnown RBP12.44□□□□□ -0.42
LIG1-219ENST00000600055 ST3GAL6Q9Y274 331 aa12.44□□□□□ -0.42
LIG1-219ENST00000600055 hADV38S2A0JD32 116 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 MEGF11A6BM72 1044 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 DNAJC9-AS1A6NH13 148 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 C17orf98A8MV24 154 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 GEMIN2O14893 280 aaKnown RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 ZNF728P0DKX0 622 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 ERP29P30040 261 aaKnown RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 P2RX3P56373 397 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 RBM11P57052 281 aaKnown RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 UBA52P62987 128 aaKnown RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 GUCA2AQ02747 115 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 MEF2CQ06413 473 aaPredicted RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 ATXN7L3Q14CW9 347 aaPredicted RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 TRAM1Q15629 374 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 KCTD21Q4G0X4 260 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 UBE2UQ5VVX9 321 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 NCR3LG1Q68D85 454 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 ZNF782Q6ZMW2 699 aaPredicted RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.43□□□□□ -0.42
LIG1-219ENST00000600055 PHYHIPQ92561 330 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 ZDHHC16Q969W1 377 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 JMJD8Q96S16 334 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 BANF2Q9H503 90 aa12.43□□□□□ -0.42
LIG1-219ENST00000600055 TRIM77I1YAP6 450 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 NPFFO15130 113 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 ZNF780AO75290 641 aaPredicted RBP12.42□□□□□ -0.42
LIG1-219ENST00000600055 GTF2F2P13984 249 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 COX7A1P24310 79 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 PSMA1P25786 263 aaKnown RBP12.42□□□□□ -0.42
LIG1-219ENST00000600055 GABRA5P31644 462 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 UBE2E1P51965 193 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 SLC9A3R2Q15599 337 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 PAN3Q58A45 887 aaKnown RBP12.42□□□□□ -0.42
LIG1-219ENST00000600055 NHLRC3Q5JS37 347 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 KRBOX4Q5JUW0 171 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 ZNF773Q6PK81 442 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 BRICD5Q6PL45 260 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 TRAPPC6BQ86SZ2 158 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 TMEM104Q8NE00 496 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 ZNF714Q96N38 554 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 GFI1Q99684 422 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 UQCC2Q9BRT2 126 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 PRDM13Q9H4Q3 707 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 TNFRSF19Q9NS68 423 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 LINC00312Q9Y6C7 94 aa12.42□□□□□ -0.42
LIG1-219ENST00000600055 ODAMA1E959 279 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 HOXA3O43365 443 aaPredicted RBP12.41□□□□□ -0.42
LIG1-219ENST00000600055 MMP23AO75900 390 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 OR7C1O76099 320 aaPredicted RBP12.41□□□□□ -0.42
LIG1-219ENST00000600055 CSN2P05814 226 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 CALRP27797 417 aaKnown RBP12.41□□□□□ -0.42
LIG1-219ENST00000600055 PSMB9P28065 219 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 GPR176Q14439 515 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 TAF9Q16594 264 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 GLT8D1Q68CQ7 371 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 Q6YL49 198 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 SUMF2Q8NBJ7 301 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 PLPPR1Q8TBJ4 325 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 C17orf50Q8WW18 174 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 SLITRK2Q9H156 845 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 KCNK15Q9H427 330 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 VCX3AQ9NNX9 186 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 NDUFB11Q9NX14 153 aa12.41□□□□□ -0.42
LIG1-219ENST00000600055 AK6Q9Y3D8 172 aaKnown RBP12.41□□□□□ -0.42
LIG1-219ENST00000600055 ATRQ13535 2644 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 hCG_1809904A0A1W2PP81 198 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 A0A1W2PPE2 198 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 A0A1W2PR64 198 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 A0A1W2PRV1 198 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms