RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 FGF20Q9NP95 211 aaPredicted RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 ACOT13Q9NPJ3 140 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 MRPS18AQ9NVS2 196 aaKnown RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 CLEC2DQ9UHP7 191 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 SLC7A11Q9UPY5 501 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 CAB39Q9Y376 341 aaPredicted RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 CEPT1Q9Y6K0 416 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 TRBV2A0A0J9YWF9 115 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 DAPL1A0PJW8 107 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 IRGMA1A4Y4 181 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 SIRPB1O00241 398 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ZFPL1O95159 310 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 LALBAP00709 142 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 UBCP0CG48 685 aaKnown RBP8.43□□□□□ -1.06
LIG1-213ENST00000596672 PRKACAP17612 351 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 PSMB9P28065 219 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 GABRA5P31644 462 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 GLIPR1P48060 266 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 RBP2P50120 134 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ETV1P50549 477 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 CCR9P51686 369 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 MTCP1P56278 107 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 RAB40BQ12829 278 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ALKBH1Q13686 389 aaKnown RBP8.43□□□□□ -1.06
LIG1-213ENST00000596672 GALEQ14376 348 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 SSX2Q16385 188 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 AANATQ16613 207 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 TMEM244Q5VVB8 128 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 GPR107Q5VW38 600 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ZNF529Q6P280 563 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 CLVS1Q8IUQ0 354 aaPredicted RBP8.43□□□□□ -1.06
LIG1-213ENST00000596672 LYG1Q8N1E2 194 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ACBD7Q8N6N7 88 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 OR51A2Q8NGJ7 313 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 FAM110DQ8TAY7 271 aaPredicted RBP8.43□□□□□ -1.06
LIG1-213ENST00000596672 PP6455Q8WZ26 134 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 C10orf35Q96D05 121 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ORAI1Q96D31 301 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 PDCD1LG2Q9BQ51 273 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ALG8Q9BVK2 526 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 CDCA4Q9BXL8 241 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 PLEKHA1Q9HB21 404 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 ERVK13-1Q9NX77 482 aa8.43□□□□□ -1.06
LIG1-213ENST00000596672 DIMT1Q9UNQ2 313 aaKnown RBP8.43□□□□□ -1.06
LIG1-213ENST00000596672 A0A0G2JK05 382 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 FAM172BPA6NC97 362 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 GATBO75879 557 aaKnown RBP8.42□□□□□ -1.06
LIG1-213ENST00000596672 KDM4BO94953 1096 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 OR2H2O95918 312 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ARG1P05089 322 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 CGB3P0DN86 165 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 CGB7P0DN87 165 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 CD24P25063 80 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 LMO1P25800 156 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ATP1B3P54709 279 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ACTA2P62736 377 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 BLCAPP62952 87 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ACTG2P63267 376 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ACTC1P68032 377 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ACTA1P68133 377 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 AESQ08117 197 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 GRK1Q15835 563 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 TMEM95Q3KNT9 176 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 PRAMEF5Q5TYX0 476 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 UBE2UQ5VVX9 321 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 Q8N2B8 174 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 KLHDC1Q8N7A1 406 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 OR4P4Q8NGL7 312 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 OR13F1Q8NGS4 319 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 RPS4Y2Q8TD47 263 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 OPALINQ96PE5 141 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 OR5M11Q96RB7 305 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 MMP27Q9H306 513 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 CHCHD3Q9NX63 227 aaKnown RBP8.42□□□□□ -1.06
LIG1-213ENST00000596672 ETAA1Q9NY74 926 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 HHLA2Q9UM44 414 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 TCF19Q9Y242 345 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 ERGIC3Q9Y282 383 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 GSTK1Q9Y2Q3 226 aa8.42□□□□□ -1.06
LIG1-213ENST00000596672 IGHV2-26A0A0B4J1V2 119 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 FAM90A22PA8MWA6 464 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 SLC33A1O00400 549 aaPredicted RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 RBP4P02753 201 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 HSMCR30P0CW71 290 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 MYL12AP19105 171 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 GABRR1P24046 479 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 DCKP27707 260 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 P2RX3P56373 397 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 MEF2CQ06413 473 aaPredicted RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 CNN3Q15417 329 aaKnown RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 MED22Q15528 200 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 TBCEQ15813 527 aaPredicted RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 FAM189A2Q15884 450 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 C17orf58Q2M2W7 97 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 SYT6Q5T7P8 510 aaPredicted RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 OR2G6Q5TZ20 316 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 FAM53AQ6NSI3 398 aaPredicted RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 GDPD3Q7L5L3 318 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 FAM220AQ7Z4H9 259 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 KCTD20Q7Z5Y7 419 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms