RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 IL36GQ9NZH8 169 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 VPREB3Q9UKI3 123 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 UBE2J1Q9Y385 318 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-206ENST00000595974 TRBV5-7A0A0A0MS05 114 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 A0A0G2JK05 382 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 A0A1B0GUS0 222 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 MEX3AA1L020 520 aaKnown RBP13.19□□□□□ -0.3
TRIM28-206ENST00000595974 SLC33A1O00400 549 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-206ENST00000595974 DEGS1O15121 323 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 CLPXO76031 633 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 NDUFA7O95182 113 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 MAPK3P27361 379 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-206ENST00000595974 OR3A4PP47883 348 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 LGALS4P56470 323 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 SCN1BQ07699 218 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 TAF9Q16594 264 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 GDPGP1Q6ZNW5 385 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 OR4F5Q8NH21 305 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 ORAI1Q96D31 301 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 ZNF184Q99676 751 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-206ENST00000595974 PAK1IP1Q9NWT1 392 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-206ENST00000595974 TPRKBQ9Y3C4 175 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 MMP24Q9Y5R2 645 aa13.19□□□□□ -0.3
TRIM28-206ENST00000595974 TRAV8-7A0A075B6U6 113 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 TRGV10A0A0A0MS01 117 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 POM121CA8CG34 1229 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 ODF3BA8MYP8 253 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 PTGES3LE9PB15 166 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 RAG2P55895 527 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 SLC35A2P78381 396 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 DOC2BQ14184 412 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 AANATQ16613 207 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 NHLRC3Q5JS37 347 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 ZNF626Q68DY1 528 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 IZUMO2Q6UXV1 221 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 TRAPPC6BQ86SZ2 158 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 C17orf50Q8WW18 174 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 FOXRED1Q96CU9 486 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-206ENST00000595974 AJUBAQ96IF1 538 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 DERL3Q96Q80 235 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 S100A13Q99584 98 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 ZNF747Q9BV97 191 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 METTL9Q9H1A3 318 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 MEGF9Q9H1U4 602 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 GAL3ST2Q9H3Q3 398 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 C1RLQ9NZP8 487 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 FOXJ3Q9UPW0 622 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 TBL2Q9Y4P3 447 aaKnown RBP13.18□□□□□ -0.3
TRIM28-206ENST00000595974 SESN1Q9Y6P5 492 aa13.18□□□□□ -0.3
TRIM28-206ENST00000595974 ZNF780AO75290 641 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 CSTBP04080 98 aaKnown RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 MDKP21741 143 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 OMGP23515 440 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 TGFBR2P37173 567 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 RELBQ01201 579 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 AESQ08117 197 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 SPHARQ15513 63 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 LRRC75BQ2VPJ9 315 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 PAN3Q58A45 887 aaKnown RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 KRBOX4Q5JUW0 171 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 OR11H6Q8NGC7 330 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 OR10K1Q8NGX5 313 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 CORO2AQ92828 525 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 COQ2Q96H96 371 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 NR1H4Q96RI1 486 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 NKX3-1Q99801 234 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 BEX1Q9HBH7 125 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 PCDHB16Q9NRJ7 776 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 TAS2R3Q9NYW6 316 aa13.17□□□□□ -0.3
TRIM28-206ENST00000595974 LSM2Q9Y333 95 aaKnown RBP13.17□□□□□ -0.3
TRIM28-206ENST00000595974 ODAMA1E959 279 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 MAGEA13PA6NCF6 341 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 FAM90A8PA6NJQ4 464 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 H3BUX3 64 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 CDRT1O95170 752 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 HTR3BO95264 441 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 ARG1P05089 322 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 GLIPR1P48060 266 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 KCNJ3P48549 501 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 RBM11P57052 281 aaKnown RBP13.16□□□□□ -0.3
TRIM28-206ENST00000595974 IRF3Q14653 427 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 ATXN7L3Q14CW9 347 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-206ENST00000595974 PIGYQ3MUY2 71 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 DHRS7BQ6IAN0 325 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-206ENST00000595974 SHISA2Q6UWI4 295 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 LINC00596Q86U02 117 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 CDH26Q8IXH8 852 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 OSR2Q8N2R0 312 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 MS4A15Q8N5U1 240 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 NKAIN3Q8N8D7 197 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 SGCDQ92629 289 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 TAF15Q92804 592 aaKnown RBP eCLIP13.16□□□□□ -0.3
TRIM28-206ENST00000595974 SSX3Q99909 188 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 TMEM133Q9H2Q1 129 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 DUSP21Q9H596 190 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 ING4Q9UNL4 249 aa13.16□□□□□ -0.3
TRIM28-206ENST00000595974 IGHV2-26A0A0B4J1V2 119 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 TRAV24A0A0B4J272 114 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 RGS10O43665 173 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 SERPINA2P20848 420 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms