RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 SF3B6Q9Y3B4 125 aaKnown RBP11.92□□□□□ -0.5
VRK3-206ENST00000594090 A0A0G2JK05 382 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 hCG_1809904A0A1W2PP81 198 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PPE2 198 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PR64 198 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PRV1 198 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 hADV38S2A0JD32 116 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 C17orf98A8MV24 154 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 ZNF780AO75290 641 aaPredicted RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 CSTBP04080 98 aaKnown RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 UCHL1P09936 223 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 ZNF728P0DKX0 622 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 PSMA1P25786 263 aaKnown RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 ERP29P30040 261 aaKnown RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 P2RX3P56373 397 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 RBM11P57052 281 aaKnown RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 EMX1Q04741 257 aaPredicted RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 TRAM1Q15629 374 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 SLC22A6Q4U2R8 563 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 HSD17B12Q53GQ0 312 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 NHLRC3Q5JS37 347 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 AWAT2Q6E213 333 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 HCP5Q6MZN7 132 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 TMEM91Q6ZNR0 172 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 CEACAM19Q7Z692 300 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 LRRTM1Q86UE6 522 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 OSR2Q8N2R0 312 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 SVOPQ8N4V2 548 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 OR4D6Q8NGJ1 314 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 PHYHIPQ92561 330 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 ZNF714Q96N38 554 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 DUX5Q96PT3 197 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 YTHDF1Q9BYJ9 559 aaKnown RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 PPIL3Q9H2H8 161 aaKnown RBP11.91□□□□□ -0.5
VRK3-206ENST00000594090 PRDM13Q9H4Q3 707 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 LINC00312Q9Y6C7 94 aa11.91□□□□□ -0.5
VRK3-206ENST00000594090 TRAV24A0A0B4J272 114 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 A0A0U1RQK1 487 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PP11 408 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PRD5 423 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PRF3 423 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 A0A1W2PRM7 423 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 MEGF11A6BM72 1044 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 HSPB6O14558 160 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 NPFFO15130 113 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 RBP4P02753 201 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 GABRA5P31644 462 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 UBE2E1P51965 193 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 ERVFRD-1P60508 538 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 GLIPR1L1Q6UWM5 242 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 PNKDQ8N490 385 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 FAM216AQ8WUB2 273 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 ZDHHC16Q969W1 377 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 COQ2Q96H96 371 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 UQCC2Q9BRT2 126 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 ZMAT3Q9HA38 289 aaKnown RBP11.9□□□□□ -0.5
VRK3-206ENST00000594090 PCDHB16Q9NRJ7 776 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 ST3GAL6Q9Y274 331 aa11.9□□□□□ -0.5
VRK3-206ENST00000594090 FUOMA2VDF0 154 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 CLDN34H7C241 214 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 GTF2F2P13984 249 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 SRMP19623 302 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 SAA4P35542 130 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 GLIPR1P48060 266 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 AESQ08117 197 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 GPR176Q14439 515 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 ATXN7L3Q14CW9 347 aaPredicted RBP11.89□□□□□ -0.51
VRK3-206ENST00000594090 SLC9A3R2Q15599 337 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 SSX1Q16384 188 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 PAN3Q58A45 887 aaKnown RBP11.89□□□□□ -0.51
VRK3-206ENST00000594090 KRBOX4Q5JUW0 171 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 ZNF782Q6ZMW2 699 aaPredicted RBP11.89□□□□□ -0.51
VRK3-206ENST00000594090 TRAPPC6BQ86SZ2 158 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 LINC00596Q86U02 117 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 SPARTQ8N0X7 666 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 IFT22Q9H7X7 185 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 HEXA-AS1Q9H8Q6 139 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 ZNF581Q9P0T4 197 aa11.89□□□□□ -0.51
VRK3-206ENST00000594090 UBE2J1Q9Y385 318 aaPredicted RBP11.89□□□□□ -0.51
VRK3-206ENST00000594090 MEIOCA2RUB1 952 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 GEMIN2O14893 280 aaKnown RBP11.88□□□□□ -0.51
VRK3-206ENST00000594090 HOXA3O43365 443 aaPredicted RBP11.88□□□□□ -0.51
VRK3-206ENST00000594090 OR7C1O76099 320 aaPredicted RBP11.88□□□□□ -0.51
VRK3-206ENST00000594090 MELTFP08582 738 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 COX7A1P24310 79 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 FABP5Q01469 135 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 MPV17LQ2QL34 196 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 UBE2UQ5VVX9 321 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 GLT8D1Q68CQ7 371 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 Q6YL49 198 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 SPATA3Q8NHX4 192 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 SLITRK2Q9H156 845 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 NDUFB11Q9NX14 153 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 ATRQ13535 2644 aa11.88□□□□□ -0.51
VRK3-206ENST00000594090 TRGV10A0A0A0MS01 117 aa11.87□□□□□ -0.51
VRK3-206ENST00000594090 ODAMA1E959 279 aa11.87□□□□□ -0.51
VRK3-206ENST00000594090 RRP9O43818 475 aaKnown RBP11.87□□□□□ -0.51
VRK3-206ENST00000594090 ARL6IP5O75915 188 aa11.87□□□□□ -0.51
VRK3-206ENST00000594090 CLPXO76031 633 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms