RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TENM2Q9NT68 2774 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 IGKV1D-42A0A075B6H8 117 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 BORCS7-ASMTA0A0B4J1R7 106 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 IGHV3-20A0A0C4DH32 117 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 LOC107986453A0A1B0GWG9 222 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 A0A1B0GWJ7 208 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 A0A1W2PPE2 198 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SYNDIG1LA6NDD5 238 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 CXorf65A6NEN9 183 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 VSTM2BA6NLU5 285 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 H3BMH7 237 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 M0R036 132 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 PSMD9O00233 223 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 DCTN6O00399 190 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 PPP1R2P9O14990 202 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 FOXS1O43638 330 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR10H2O60403 315 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SRSF10O75494 262 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR2C1O95371 312 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 PTBP3O95758 552 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 IFNA6P05013 189 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ERCC1P07992 297 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 SNRNP70P08621 437 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR8U9P0C7N5 309 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ASAH2BP0C7U1 165 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 S1PR1P21453 382 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 FGF7P21781 194 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 HSD11B1P28845 292 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 DDTP30046 118 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 HRH1P35367 487 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 THBS4P35443 961 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 AQP2P41181 271 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 CDKN2AP42771 156 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 DNASE1L1P49184 302 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 EMP2P54851 167 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 TAS2R46P59540 309 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 RAP1AP62834 184 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SLC35A1P78382 337 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 BTN3A2P78410 334 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 PLGLB1Q02325 96 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ZNF117Q03924 483 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 LOXL1Q08397 574 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 MFGE8Q08431 387 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 IL15RAQ13261 267 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 BIKQ13323 160 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 EBPQ15125 230 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 GUK1Q16774 197 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 HIKESHIQ53FT3 197 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 RPL7L1Q6DKI1 246 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 WBP2NLQ6ICG8 309 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 KCTD18Q6PI47 426 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 TMPPEQ6ZT21 453 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SEM1Q6ZVN7 128 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 KCTD9Q7L273 389 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ATG4DQ86TL0 474 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 MRPL52Q86TS9 123 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 LHFPL1Q86WI0 220 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 HIST3H2BBQ8N257 126 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ARHGEF39Q8N4T4 335 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ZNF441Q8N8Z8 693 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ZNF565Q8N9K5 539 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ZNF383Q8NA42 475 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ADAD2Q8NCV1 583 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR10H5Q8NGA6 315 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR13C3Q8NGS6 347 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR8U1Q8NH10 309 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR52N5Q8NH56 324 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 AKR7LQ8NHP1 331 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 M1APQ8TC57 530 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 ZNF418Q8TF45 676 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 CASTOR1Q8WTX7 329 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SECTM1Q8WVN6 248 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 TMEM230Q96A57 120 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SLC22A18Q96BI1 424 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 CTHRC1Q96CG8 243 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 MUCL1Q96DR8 90 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 TM4SF19Q96DZ7 209 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 KTI12Q96EK9 354 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 SLC25A44Q96H78 314 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 TMEM68Q96MH6 324 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 NOL4LQ96MY1 436 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 RBM14Q96PK6 669 aaKnown RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 TSPAN32Q96QS1 320 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SSX3Q99909 188 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 GINS3Q9BRX5 216 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 G6PC3Q9BUM1 346 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SCRT1Q9BWW7 348 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 KRTAP4-7Q9BYR0 210 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SLC35B3Q9H1N7 401 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SLC26A1Q9H2B4 701 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SRMSQ9H3Y6 488 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 MOB1AQ9H8S9 216 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 PLEKHA2Q9HB19 425 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 SPACA1Q9HBV2 294 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 MMP25Q9NPA2 562 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 OR2S2Q9NQN1 319 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 C1orf123Q9NWV4 160 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 HHLA2Q9UM44 414 aa3.58□□□□□ -1.84
LIG3-211ENST00000588713 KLF13Q9Y2Y9 288 aaPredicted RBP3.58□□□□□ -1.84
LIG3-211ENST00000588713 R4GMQ9 66 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms