RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ARG1P05089 322 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 PAX6P26367 422 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 OR3A4PP47883 348 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 RPS11P62280 158 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHMT1-206ENST00000579558 AESQ08117 197 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 RIPK1Q13546 671 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 LRRC75BQ2VPJ9 315 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 DHRS7BQ6IAN0 325 aaPredicted RBP19.41■□□□□ 0.7
SHMT1-206ENST00000579558 OR10K1Q8NGX5 313 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 SGMS2Q8NHU3 365 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 CKLFQ9UBR5 152 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 ERGIC3Q9Y282 383 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 UBE2J1Q9Y385 318 aaPredicted RBP19.41■□□□□ 0.7
SHMT1-206ENST00000579558 SESN1Q9Y6P5 492 aa19.41■□□□□ 0.7
SHMT1-206ENST00000579558 TRGV10A0A0A0MS01 117 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 CLPXO76031 633 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 IGFBP3P17936 291 aaPredicted RBP19.4■□□□□ 0.7
SHMT1-206ENST00000579558 ZNF93P35789 620 aaPredicted RBP19.4■□□□□ 0.7
SHMT1-206ENST00000579558 PTGFRP43088 359 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 GLIPR1P48060 266 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 C6orf141Q5SZD1 244 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 OLFML2AQ68BL7 652 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 LHFPL4Q7Z7J7 247 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 NANOGP1Q8N7R0 232 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 SLITRK2Q9H156 845 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 ING3Q9NXR8 418 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 ING4Q9UNL4 249 aa19.4■□□□□ 0.7
SHMT1-206ENST00000579558 CLPSL1A2RUU4 121 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 ODF3BA8MYP8 253 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 CDRT1O95170 752 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 HTR3BO95264 441 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 CSN2P05814 226 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 CDK1P06493 297 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 CELP19835 753 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 DYNC1I2Q13409 638 aaKnown RBP19.39■□□□□ 0.69
SHMT1-206ENST00000579558 IL13RA2Q14627 380 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 ATXN7L3Q14CW9 347 aaPredicted RBP19.39■□□□□ 0.69
SHMT1-206ENST00000579558 KRBOX4Q5JUW0 171 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 ZNF626Q68DY1 528 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 ASCL4Q6XD76 172 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 OR11H6Q8NGC7 330 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 OR51T1Q8NGJ9 327 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 OR14A2Q96R54 314 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 METTL9Q9H1A3 318 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 GAL3ST2Q9H3Q3 398 aa19.39■□□□□ 0.69
SHMT1-206ENST00000579558 TBL2Q9Y4P3 447 aaKnown RBP19.39■□□□□ 0.69
SHMT1-206ENST00000579558 FAM90A8PA6NJQ4 464 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 PTGES3LE9PB15 166 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 HSPB6O14558 160 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 GPX5O75715 221 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 FSTP19883 344 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 DOC2BQ14184 412 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 LY6EQ16553 131 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 AANATQ16613 207 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 PIGYQ3MUY2 71 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 Q8NFD4 153 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 MYDGFQ969H8 173 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 FOXRED1Q96CU9 486 aaPredicted RBP19.38■□□□□ 0.69
SHMT1-206ENST00000579558 COQ2Q96H96 371 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 S100A13Q99584 98 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 ZNF184Q99676 751 aaPredicted RBP19.38■□□□□ 0.69
SHMT1-206ENST00000579558 SCN3BQ9NY72 215 aa19.38■□□□□ 0.69
SHMT1-206ENST00000579558 TRAV8-7A0A075B6U6 113 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 TRBV5-7A0A0A0MS05 114 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 A0A1W2PPK0 400 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 ODAMA1E959 279 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 CD1AP06126 327 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 TGFBR2P37173 567 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 PAN3Q58A45 887 aaKnown RBP19.37■□□□□ 0.69
SHMT1-206ENST00000579558 Q6ZSV7 163 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 WFDC12Q8WWY7 111 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 CORO2AQ92828 525 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 MND1Q9BWT6 205 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 TMEM133Q9H2Q1 129 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 VCX3BQ9H321 246 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 TAS2R3Q9NYW6 316 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 IL36GQ9NZH8 169 aa19.37■□□□□ 0.69
SHMT1-206ENST00000579558 IGHV2-26A0A0B4J1V2 119 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 MAGEA13PA6NCF6 341 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 MMP23AO75900 390 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 CSTBP04080 98 aaKnown RBP19.36■□□□□ 0.69
SHMT1-206ENST00000579558 PLA1AQ53H76 456 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 PRAMEF5Q5TYX0 476 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 RNLSQ5VYX0 342 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 LINC01006Q8NI28 216 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 MALSU1Q96EH3 234 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 DERL3Q96Q80 235 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 CLEC7AQ9BXN2 247 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 PPIL3Q9H2H8 161 aaKnown RBP19.36■□□□□ 0.69
SHMT1-206ENST00000579558 RNF114Q9Y508 228 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 KIAA2026Q5HYC2 2103 aa19.36■□□□□ 0.69
SHMT1-206ENST00000579558 TRAV24A0A0B4J272 114 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 SERPINA2P20848 420 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 CDK2P24941 298 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 BDH1Q02338 343 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 DYNAPQ8N1N2 210 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 OSR2Q8N2R0 312 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 CDCA4Q9BXL8 241 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 PAK1IP1Q9NWT1 392 aaPredicted RBP19.35■□□□□ 0.69
SHMT1-206ENST00000579558 FOXJ3Q9UPW0 622 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms