RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 MCRIP1C9JLW8 97 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 SIRPB1O00241 398 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 SIGLEC5O15389 551 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 PSPNO60542 156 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 ZNF205O95201 554 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 GIFP27352 417 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 PRSS3P35030 304 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 OR3A1P47881 315 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 SCN1BQ07699 218 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 RBM39Q14498 530 aaKnown RBP13.47□□□□□ -0.25
SS18-211ENST00000578954 TMEM155Q4W5P6 130 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 PYDC2Q56P42 97 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 PAN3Q58A45 887 aaKnown RBP13.47□□□□□ -0.25
SS18-211ENST00000578954 C17orf107Q6ZR85 190 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 DCDC5Q6ZRR9 648 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 PEG10Q86TG7 708 aaKnown RBP13.47□□□□□ -0.25
SS18-211ENST00000578954 MUC20Q8N307 709 aaPredicted RBP13.47□□□□□ -0.25
SS18-211ENST00000578954 Q8N402 240 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 ZNF561Q8N587 486 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 DEFB108BQ8NET1 73 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 RAB1CQ92928 201 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 GCDHQ92947 438 aaPredicted RBP13.47□□□□□ -0.25
SS18-211ENST00000578954 TRIM63Q969Q1 353 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 TIMD4Q96H15 378 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 SNX22Q96L94 193 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 TMEM246Q9BRR3 403 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 FAAP24Q9BTP7 215 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 SHARPINQ9H0F6 387 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 FAM234AQ9H0X4 552 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 BEX4Q9NWD9 120 aaPredicted RBP13.47□□□□□ -0.25
SS18-211ENST00000578954 ANAPC10Q9UM13 185 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 EDARQ9UNE0 448 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 CRYBG3Q68DQ2 2970 aa13.47□□□□□ -0.25
SS18-211ENST00000578954 ARID1AO14497 2285 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 MEIOCA2RUB1 952 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 NKX6-3A6NJ46 265 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 J3QRK9 145 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 K7N7A8 449 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 SSX5O60225 188 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 GYPAP02724 150 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 TFF1P04155 84 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 LPLP06858 475 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 CSF3P09919 207 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 ATP5J2P56134 94 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 GNG2P59768 71 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 DGCR2P98153 550 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 OR52I2Q8NH67 350 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 PPP1R35Q8TAP8 253 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 BORCS5Q969J3 196 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 MBD6Q96DN6 1003 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 AK3Q9UIJ7 227 aa13.46□□□□□ -0.25
SS18-211ENST00000578954 TRBV6-6A0A0A6YYG2 114 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 POM121CA8CG34 1229 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 NAPSAO96009 420 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 DTYMKP23919 212 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 GPR6P46095 362 aaPredicted RBP13.45□□□□□ -0.26
SS18-211ENST00000578954 GABRA2P47869 451 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 PDLIM4P50479 330 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 IL13RA1P78552 427 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 GUCA2AQ02747 115 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 SSBP1Q04837 148 aaKnown RBP13.45□□□□□ -0.26
SS18-211ENST00000578954 BAK1Q16611 211 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 BRICD5Q6PL45 260 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 SLC36A1Q7Z2H8 476 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 OR8H2Q8N162 312 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 LRRC75A-AS1Q8N1F1 130 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 ZNF525Q8N782 197 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 OR4S1Q8NGB4 309 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 NUDCD2Q8WVJ2 157 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 NINJ1Q92982 152 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 MED30Q96HR3 178 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 CCL13Q99616 98 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 CMSS1Q9BQ75 279 aaKnown RBP13.45□□□□□ -0.26
SS18-211ENST00000578954 OCSTAMPQ9BR26 566 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 PPA2Q9H2U2 334 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 RIMS4Q9H426 269 aaPredicted RBP13.45□□□□□ -0.26
SS18-211ENST00000578954 MTFP1Q9UDX5 166 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 ABCA12Q86UK0 2595 aa13.45□□□□□ -0.26
SS18-211ENST00000578954 A0A1B0GW55 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 UBE2QL1A1L167 161 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 NDUFS8O00217 210 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 MGST3O14880 152 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 PPIHO43447 177 aaKnown RBP13.44□□□□□ -0.26
SS18-211ENST00000578954 SSX4O60224 188 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 UPK1BO75841 260 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 TK1P04183 234 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 CD3GP09693 182 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L2P0CJ85 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L3P0CJ86 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L4P0CJ87 422 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L5P0CJ88 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L6P0CJ89 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L7P0CJ90 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 IL7P13232 177 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 CBX5P45973 191 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 ARFRP1Q13795 201 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 RSBN1Q5VWQ0 802 aaPredicted RBP13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4L9Q6RFH8 374 aaPredicted RBP13.44□□□□□ -0.26
SS18-211ENST00000578954 ZNF497Q6ZNH5 498 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 BPIFB2Q8N4F0 458 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms