RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF785A8K8V0 405 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 HSD17B6O14756 317 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 ATP6V0E1O15342 81 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 SPRY2O43597 315 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 NRASP01111 189 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 IGHV3-7P01780 117 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 H2BFMP0C1H6 154 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 ZP3P21754 424 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 OR3A1P47881 315 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 IFFO1Q0D2I5 559 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 RIPPLY1Q0D2K3 151 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 IL24Q13007 206 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 TRIM25Q14258 630 aaKnown RBP12.11□□□□□ -0.47
VPS53-218ENST00000575207 LGALS9BQ3B8N2 356 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 KIRREL1Q96J84 757 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 CEP19Q96LK0 163 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 PAIP2Q9BPZ3 127 aaKnown RBP12.11□□□□□ -0.47
VPS53-218ENST00000575207 DCAF13Q9NV06 445 aaKnown RBP12.11□□□□□ -0.47
VPS53-218ENST00000575207 SLC23A1Q9UHI7 598 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 VPS13BQ7Z7G8 4022 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 SOX15O60248 233 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 MOSP00540 346 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 IGHV3-11P01762 117 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 CSN3P07498 182 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 KDELR2P33947 212 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 F2RL1P55085 397 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 Q6ZWC4 215 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 ASRGL1Q7L266 308 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 VTCN1Q7Z7D3 282 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 ANGPTL5Q86XS5 388 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.1□□□□□ -0.47
VPS53-218ENST00000575207 LEAP2Q969E1 77 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 AMELYQ99218 206 aa12.1□□□□□ -0.47
VPS53-218ENST00000575207 FUOMA2VDF0 154 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 GSC2O15499 205 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 GAPDHP04406 335 aaKnown RBP12.09□□□□□ -0.47
VPS53-218ENST00000575207 SLC2A2P11168 524 aaPredicted RBP12.09□□□□□ -0.47
VPS53-218ENST00000575207 REG1BP48304 166 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 ERICH5Q6P6B1 374 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 EPGNQ6UW88 154 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 TMEM104Q8NE00 496 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 OR10X1Q8NGY0 326 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 CASTOR1Q8WTX7 329 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 RHOVQ96L33 236 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 PKIBQ9C010 78 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 MFFQ9GZY8 342 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 SSU72Q9NP77 194 aaKnown RBP12.09□□□□□ -0.47
VPS53-218ENST00000575207 PARP11Q9NR21 331 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 GPR173Q9NS66 373 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 FBXL7Q9UJT9 491 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 PSG11Q9UQ72 335 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 PIGLQ9Y2B2 252 aa12.09□□□□□ -0.47
VPS53-218ENST00000575207 LOC102724200A0A096LPH7 203 aaPredicted RBP12.08□□□□□ -0.48
VPS53-218ENST00000575207 ZNF729A6NN14 1252 aaPredicted RBP12.08□□□□□ -0.48
VPS53-218ENST00000575207 M0R2N4 97 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 ANGPT2O15123 496 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 ATP6V1B1P15313 513 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 CD1BP29016 333 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 ZNF91Q05481 1191 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 APOFQ13790 326 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 RBMS2Q15434 407 aaKnown RBP12.08□□□□□ -0.48
VPS53-218ENST00000575207 C17orf58Q2M2W7 97 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 C19orf54Q5BKX5 351 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 COMMD2Q86X83 199 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 ROPN1BQ9BZX4 212 aaPredicted RBP12.08□□□□□ -0.48
VPS53-218ENST00000575207 ROPN1Q9HAT0 212 aaPredicted RBP12.08□□□□□ -0.48
VPS53-218ENST00000575207 RANGRFQ9HD47 186 aaPredicted RBP12.08□□□□□ -0.48
VPS53-218ENST00000575207 MTCH1Q9NZJ7 389 aa12.08□□□□□ -0.48
VPS53-218ENST00000575207 A0A1W2PRQ8 180 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 ODAMA1E959 279 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 GYPBP06028 91 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 RBMY1CP0DJD4 496 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 NANOS2P60321 138 aaKnown RBP12.07□□□□□ -0.48
VPS53-218ENST00000575207 PSMA6P60900 246 aaKnown RBP12.07□□□□□ -0.48
VPS53-218ENST00000575207 AESQ08117 197 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 DGCR6Q14129 220 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 CYP4Z1Q86W10 505 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 ENTHD1Q8IYW4 607 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 OR6K6Q8NGW6 343 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 OR6N2Q8NGY6 317 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 ZCCHC4Q9H5U6 513 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 IL36RNQ9UBH0 155 aa12.07□□□□□ -0.48
VPS53-218ENST00000575207 A0A0U1RQV5 110 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 INMTO95050 263 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 H1F0P07305 194 aaKnown RBP12.06□□□□□ -0.48
VPS53-218ENST00000575207 DUSP1P28562 367 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 GNG10P50151 68 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 TRPM8Q7Z2W7 1104 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 C17orf53Q8N3J3 647 aaPredicted RBP12.06□□□□□ -0.48
VPS53-218ENST00000575207 EMG1Q92979 244 aaKnown RBP12.06□□□□□ -0.48
VPS53-218ENST00000575207 SLAMF9Q96A28 289 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 MBOAT4Q96T53 435 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 KRT84Q9NSB2 600 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 MBNL3Q9NUK0 354 aaKnown RBP12.06□□□□□ -0.48
VPS53-218ENST00000575207 RNF213Q63HN8 5207 aa12.06□□□□□ -0.48
VPS53-218ENST00000575207 IGHV7-81A0A0B4J1V7 117 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 TRBV4-1A0A0J9YWV2 114 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 KBTBD11-OT1A0A1B0GTJ5 212 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 A0A1W2PN81 502 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 IGLL5B9A064 214 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms