RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 NRN1Q9NPD7 142 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 NDE1Q9NXR1 346 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 ARMCX1Q9P291 453 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 WARS2Q9UGM6 360 aaKnown RBP5.05□□□□□ -1.6
VPS53-212ENST00000572259 ELF5Q9UKW6 265 aaPredicted RBP5.05□□□□□ -1.6
VPS53-212ENST00000572259 ARL2BPQ9Y2Y0 163 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 AUP1Q9Y679 476 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 MED13LQ71F56 2210 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 IGKV3D-15A0A087WSY6 115 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 IGHV3-15A0A0B4J1V0 119 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 IGHV4-28A0A0C4DH34 117 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 CIB4A0PJX0 185 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 FAM220BPB1ANY3 271 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 PET100P0DJ07 73 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 MYOD1P15172 320 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 PSMB1P20618 241 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 FASP25445 335 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 HLA-DMAP28067 261 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 HOXD3P31249 432 aaPredicted RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 MAS1LP35410 378 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 VHLP40337 213 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 KIR3DL2P43630 455 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR3A2P47893 321 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 RFX2P48378 723 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 RGS6P49758 472 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 RPL27P61353 136 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 H3F3AP84243 136 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 RAB40BQ12829 278 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 C1DQ13901 141 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR1Q1Q15612 314 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 DUSP7Q16829 419 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 SLC36A2Q495M3 483 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 CGB2Q6NT52 195 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 ZNF613Q6PF04 617 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 Q6ZT83 130 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 SSX6Q7RTT6 188 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 P2RY8Q86VZ1 359 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 ZNF738Q8NE65 137 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 NOXO1Q8NFA2 376 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR4F17Q8NGA8 305 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR5D18Q8NGL1 313 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR4F5Q8NH21 305 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 RNF133Q8WVZ7 376 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 STMN2Q93045 179 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 RCN3Q96D15 328 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 WFIKKN1Q96NZ8 548 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR4F4Q96R69 305 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 PSD2Q9BQI7 771 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 ZNF426Q9BUY5 554 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 OR11A1Q9GZK7 315 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 POLR2J2Q9GZM3 115 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 POLR2J3Q9H1A7 115 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 C8orf4Q9NR00 106 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 SIRT7Q9NRC8 400 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS53-212ENST00000572259 MRPS28Q9Y2Q9 187 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 TBL2Q9Y4P3 447 aaKnown RBP5.04□□□□□ -1.6
VPS53-212ENST00000572259 LRBAP50851 2863 aa5.04□□□□□ -1.6
VPS53-212ENST00000572259 USF3Q68DE3 2245 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 RTTNQ86VV8 2226 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 TRAV36DV7A0A075B6V5 113 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 A0A087WUJ7 227 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 A0A087WZ39 114 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 A0A0A6YYD4 124 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 A0A0B4J2E0 115 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 A0A1B0GWA3 101 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 A0A1B0GX12 115 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 TRAPPC13A5PLN9 417 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 M0QXV9 152 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 PPIHO43447 177 aaKnown RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 CHP2O43745 196 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 TPST1O60507 370 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ADAP1O75689 374 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 RAB3DO95716 219 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 OPN1SWP03999 348 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 OCM2P0CE71 109 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 NQO1P15559 274 aaKnown RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 GGT1P19440 569 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 CRYGSP22914 178 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 HSD11B1P28845 292 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 NUDT2P50583 147 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 TAS2R41P59536 307 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ERVK11-1P61568 191 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ARF6P62330 175 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 SELENOWP63302 87 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 HOXC5Q00444 222 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 SCRN3Q0VDG4 424 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 BNIP2Q12982 314 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 SRSF9Q13242 221 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS53-212ENST00000572259 NRF1Q16656 503 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ZNF260Q3ZCT1 412 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ACTBL2Q562R1 376 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 SOHLH1Q5JUK2 328 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 FBXW9Q5XUX1 488 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 PRSS57Q6UWY2 283 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 CASP12Q6UXS9 341 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 TFAP2EQ6VUC0 442 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 STAC2Q6ZMT1 411 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 LINC00336Q6ZUF6 198 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 SSX7Q7RTT5 188 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms