RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CAPSLQ8WWF8 208 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 CORO2AQ92828 525 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 RFKQ969G6 155 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 MYDGFQ969H8 173 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 RFT1Q96AA3 541 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 RBM14Q96PK6 669 aaKnown RBP11.91□□□□□ -0.5
CLN3-236ENST00000568558 COMMD4Q9H0A8 199 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 ZNF286AQ9HBT8 521 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 FAM118AQ9NWS6 357 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 TAS2R3Q9NYW6 316 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 GMPPBQ9Y5P6 360 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 TSSC4Q9Y5U2 329 aaPredicted RBP11.91□□□□□ -0.5
CLN3-236ENST00000568558 TCRBV4S1A1TA0A5B7 111 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 FUOMA2VDF0 154 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 SH2D1BO14796 132 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 KDM4BO94953 1096 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 MPIG6BO95866 241 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 PF4P02776 101 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 AMY1AP04745 511 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 AMY2AP04746 511 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 ISG15P05161 165 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 GLIPR1P48060 266 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 NANOS3P60323 173 aaKnown RBP11.9□□□□□ -0.5
CLN3-236ENST00000568558 HLA-DRB5Q30154 266 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 SLC25A30Q5SVS4 291 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 OR4X2Q8NGF9 303 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 TRUB1Q8WWH5 349 aaKnown RBP11.9□□□□□ -0.5
CLN3-236ENST00000568558 FRRS1LQ9P0K9 344 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 HHLA2Q9UM44 414 aa11.9□□□□□ -0.5
CLN3-236ENST00000568558 LOC100130705A0A1B0GUX0 176 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 ODAMA1E959 279 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 ERICH4A6NGS2 130 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 SH2D7A6NKC9 451 aaPredicted RBP11.89□□□□□ -0.51
CLN3-236ENST00000568558 K7EIL1 84 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 CSN2P05814 226 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 ZNF44P15621 663 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 CEACAM3P40198 252 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 PTGFRP43088 359 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 SLC35A2P78381 396 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 TPTE2P1Q5T6R2 138 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 FDX2Q6P4F2 183 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 C10orf99Q6UWK7 81 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 RNF144BQ7Z419 303 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 OR5D18Q8NGL1 313 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 OR10AC1Q8NH08 325 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 CREB3L1Q96BA8 519 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 RNFT2Q96EX2 444 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 COQ2Q96H96 371 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 SPACA5Q96QH8 159 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 PCDHGB5Q9Y5G0 923 aa11.89□□□□□ -0.51
CLN3-236ENST00000568558 A0A087X0M5 115 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 A0A1B0GX30 115 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 LY6LH3BQJ8 138 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 BUB1B-PAK6H3BSN5 160 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 J3QRE1 110 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 TOR1AO14656 332 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 MT-ND2P03891 347 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 OCM2P0CE71 109 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 OCMP0CE72 109 aaPredicted RBP11.88□□□□□ -0.51
CLN3-236ENST00000568558 CCR9P51686 369 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 KRBOX4Q5JUW0 171 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 Q6P435 159 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 KCTD20Q7Z5Y7 419 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 OR51A4Q8NGJ6 313 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 OR13C9Q8NGT0 318 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 RHOXF1Q8NHV9 184 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 APH1BQ8WW43 257 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 RCC1LQ96I51 464 aaKnown RBP11.88□□□□□ -0.51
CLN3-236ENST00000568558 RHOFQ9HBH0 211 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 INPP5EQ9NRR6 644 aa11.88□□□□□ -0.51
CLN3-236ENST00000568558 SMPD3Q9NY59 655 aaPredicted RBP11.88□□□□□ -0.51
CLN3-236ENST00000568558 NKX1-2Q9UD57 310 aaPredicted RBP11.88□□□□□ -0.51
CLN3-236ENST00000568558 ZNF729A6NN14 1252 aaPredicted RBP11.87□□□□□ -0.51
CLN3-236ENST00000568558 OOSP1A8MZH6 123 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 SLC33A1O00400 549 aaPredicted RBP11.87□□□□□ -0.51
CLN3-236ENST00000568558 SLC16A6O15403 523 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 DUS4LO95620 317 aaKnown RBP11.87□□□□□ -0.51
CLN3-236ENST00000568558 CLIC3O95833 236 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 HTR1AP08908 422 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 SCN1BQ07699 218 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 ATXN7L3Q14CW9 347 aaPredicted RBP11.87□□□□□ -0.51
CLN3-236ENST00000568558 C17orf58Q2M2W7 97 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 KHDC1LQ5JSQ8 128 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 UTF1Q5T230 341 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 MEDAGQ5VYS4 303 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 CCDC144NLQ6NUI1 221 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 SAXO1Q8IYX7 474 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 CHST4Q8NCG5 386 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 OR4D6Q8NGJ1 314 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 OR13C3Q8NGS6 347 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 NEK6Q9HC98 313 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 AMBNQ9NP70 447 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 ING3Q9NXR8 418 aa11.87□□□□□ -0.51
CLN3-236ENST00000568558 DAPL1A0PJW8 107 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 OR4C45A6NMZ5 311 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 M0QZK8 103 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 DBTP11182 482 aaKnown RBP11.86□□□□□ -0.51
CLN3-236ENST00000568558 MNDAP41218 407 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 PRRX1P54821 245 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 KRTAP10-11P60412 298 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms