RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FABP5Q01469 135 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 FAM189A2Q15884 450 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 TAF9Q16594 264 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 SLC22A6Q4U2R8 563 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 UTF1Q5T230 341 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 CD276Q5ZPR3 534 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 OR10K2Q6IF99 312 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 LRRTM1Q86UE6 522 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 SPARTQ8N0X7 666 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 MRAPQ8TCY5 172 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 GFI1Q99684 422 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 MGLLQ99685 303 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 BANF2Q9H503 90 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 FAM181BA6NEQ2 426 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 G3V4G9 280 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 RNASEK-C17orf49H0YIS7 233 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 K7N7A8 449 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 MAGEB3O15480 346 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 ZNF44P15621 663 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 PTGFRP43088 359 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 RPL31P62899 125 aaKnown RBP11.34□□□□□ -0.59
CLN3-235ENST00000568497 AESQ08117 197 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 ATXN7L3Q14CW9 347 aaPredicted RBP11.34□□□□□ -0.59
CLN3-235ENST00000568497 RSU1Q15404 277 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 GRK1Q15835 563 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 DEFB112Q30KQ8 113 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 BEAN1Q3B7T3 259 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 UNQ9370/PRO34162Q6UXP9 181 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 C5orf24Q7Z6I8 188 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 PNLDC1Q8NA58 520 aaKnown RBP11.34□□□□□ -0.59
CLN3-235ENST00000568497 FAM46BQ96A09 425 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 TMEM138Q9NPI0 162 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 SF3B6Q9Y3B4 125 aaKnown RBP11.34□□□□□ -0.59
CLN3-235ENST00000568497 DSCAML1Q8TD84 2053 aa11.34□□□□□ -0.59
CLN3-235ENST00000568497 SHISA3A0PJX4 238 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 RRP9O43818 475 aaKnown RBP11.33□□□□□ -0.6
CLN3-235ENST00000568497 MMP23AO75900 390 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 CHRM2P08172 466 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 CPEP16870 476 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 PSMB9P28065 219 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 GLIPR1P48060 266 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 ACSM1Q08AH1 577 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 TPBGQ13641 420 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 P2RY14Q15391 338 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 HCP5Q6MZN7 132 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 GLIPR1L1Q6UWM5 242 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 PIP4P2Q8N4L2 257 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 ZNF561Q8N587 486 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 UBALD1Q8TB05 177 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 HAVCR2Q8TDQ0 301 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 DYRK2Q92630 601 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 DNTTIP1Q9H147 329 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 Q9H521 79 aa11.33□□□□□ -0.6
CLN3-235ENST00000568497 EXOSC4Q9NPD3 245 aaKnown RBP11.33□□□□□ -0.6
CLN3-235ENST00000568497 MRPS28Q9Y2Q9 187 aaKnown RBP11.33□□□□□ -0.6
CLN3-235ENST00000568497 AK6Q9Y3D8 172 aaKnown RBP11.33□□□□□ -0.6
CLN3-235ENST00000568497 TRAV24A0A0B4J272 114 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 A0A0U1RQK1 487 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 CLPSL1A2RUU4 121 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 SLC33A1O00400 549 aaPredicted RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 GEMIN2O14893 280 aaKnown RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 DEGS1O15121 323 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 HOXA3O43365 443 aaPredicted RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 LIPFP07098 398 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 JUNBP17275 347 aaPredicted RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 FSTP19883 344 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 GDNFP39905 211 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 BMXP51813 675 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 CAV3P56539 151 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 CLDN12P56749 244 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 BDH1Q02338 343 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 MLLT11Q13015 90 aaPredicted RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 PLA2G7Q13093 441 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 TBCEQ15813 527 aaPredicted RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 NEDD8Q15843 81 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 FAM53AQ6NSI3 398 aaPredicted RBP11.32□□□□□ -0.6
CLN3-235ENST00000568497 ZNF367Q7RTV3 350 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 REC114Q7Z4M0 266 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 LYPD6Q86Y78 171 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 C11orf42Q8N5U0 333 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 TMEM104Q8NE00 496 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 PLPPR1Q8TBJ4 325 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 TNFRSF14Q92956 283 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 COQ2Q96H96 371 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 RNF167Q9H6Y7 350 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 TCF7L1Q9HCS4 588 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 ZNRD1Q9P1U0 126 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 CKLFQ9UBR5 152 aa11.32□□□□□ -0.6
CLN3-235ENST00000568497 A0A0B4J203 849 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 IGHV1-69DA0A0B4J2H0 117 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 ECDO95905 644 aaPredicted RBP11.31□□□□□ -0.6
CLN3-235ENST00000568497 IGHV1-69P01742 117 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 ALDOBP05062 364 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 DLX6P56179 175 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 OR10A3P58181 314 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 KRTAP10-3P60369 221 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 GABARAPL2P60520 117 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 ZNF146Q15072 292 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 HSD17B12Q53GQ0 312 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 PRAMEF5Q5TYX0 476 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms