RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SCO1O75880 301 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 CRYZL1O95825 349 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 GLI4P10075 376 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 HERPUD1Q15011 391 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 WDR86Q86TI4 376 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 SUMF2Q8NBJ7 301 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 OR5T2Q8NGG2 359 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 CNTNAP3BQ96NU0 1288 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 CNTNAP3Q9BZ76 1288 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 PKIBQ9C010 78 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 TUBD1Q9UJT1 453 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 MEMO1Q9Y316 297 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 PET100P0DJ07 73 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 PPP1CBP62140 327 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 ALKBH6Q3KRA9 238 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 PAN3Q58A45 887 aaKnown RBP17.29■□□□□ 0.36
CLN3-230ENST00000568076 FOXRED2Q8IWF2 684 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 FAM58AQ8N1B3 248 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 MSI2Q96DH6 328 aaKnown RBP17.29■□□□□ 0.36
CLN3-230ENST00000568076 TAAR6Q96RI8 345 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 PLK3Q9H4B4 646 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 CDH20Q9HBT6 801 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 TRAV24A0A0B4J272 114 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 LGALS8O00214 317 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 IFNA21P01568 189 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 HERV-K104P61576 105 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 C20orf204Q6ZNR8 217 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 HSD17B13Q7Z5P4 300 aaPredicted RBP17.28■□□□□ 0.36
CLN3-230ENST00000568076 LINC00596Q86U02 117 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 CCDC36Q8IYA8 594 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 LRTM2Q8N967 370 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 BVESQ8NE79 360 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 GLYATL2Q8WU03 294 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 SUCNR1Q9BXA5 334 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 SHARPINQ9H0F6 387 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 DNAJB11Q9UBS4 358 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 ZNF891A8MT65 544 aaPredicted RBP17.28■□□□□ 0.36
CLN3-230ENST00000568076 ZP3P21754 424 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 FOXF2Q12947 444 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 LIAT1Q6ZQX7 453 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 LYZL2Q7Z4W2 148 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 NEK7Q8TDX7 302 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 SARAFQ96BY9 339 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 C18orf12Q96KH6 178 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 SLC5A7Q9GZV3 580 aa17.28■□□□□ 0.36
CLN3-230ENST00000568076 IGKV1-6A0A0C4DH72 117 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 PRR33A8MZF0 331 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 J3QT63 122 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 BET1O15155 118 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 GNRHRP30968 328 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 KCNJ3P48549 501 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 NAAAQ02083 359 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 MRPL49Q13405 166 aaKnown RBP17.27■□□□□ 0.36
CLN3-230ENST00000568076 IL13RA2Q14627 380 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 FAM76BQ5HYJ3 339 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 INO80CQ6PI98 192 aaPredicted RBP17.27■□□□□ 0.36
CLN3-230ENST00000568076 EIF4E3Q8N5X7 224 aaKnown RBP17.27■□□□□ 0.36
CLN3-230ENST00000568076 LHFPL5Q8TAF8 219 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 SLC25A40Q8TBP6 338 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 MRPL30Q8TCC3 161 aaKnown RBP17.27■□□□□ 0.36
CLN3-230ENST00000568076 WNT2BQ93097 391 aa17.27■□□□□ 0.36
CLN3-230ENST00000568076 ESPL1Q14674 2120 aa17.27■□□□□ 0.35
CLN3-230ENST00000568076 HS3ST1O14792 307 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 TPT1P13693 172 aaKnown RBP17.26■□□□□ 0.35
CLN3-230ENST00000568076 COX5AP20674 150 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 NUP62P37198 522 aaPredicted RBP17.26■□□□□ 0.35
CLN3-230ENST00000568076 ACSF3Q4G176 576 aaPredicted RBP17.26■□□□□ 0.35
CLN3-230ENST00000568076 BAP18Q8IXM2 172 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 WDR31Q8NA23 367 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 RDH5Q92781 318 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 TP53RKQ96S44 253 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 SYT3Q9BQG1 590 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 SPACA1Q9HBV2 294 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 ATP23Q9Y6H3 246 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 TRDCB7Z8K6 153 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 DEDDO75618 318 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 CNOT4O95628 575 aaKnown RBP17.26■□□□□ 0.35
CLN3-230ENST00000568076 HKR1P10072 659 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 NOVA1P51513 510 aaKnown RBP17.26■□□□□ 0.35
CLN3-230ENST00000568076 UCP2P55851 309 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 OR2A2Q6IF42 318 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 GTF3AQ92664 365 aaKnown RBP17.26■□□□□ 0.35
CLN3-230ENST00000568076 RTL8AQ9BWD3 113 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 SESN1Q9Y6P5 492 aa17.26■□□□□ 0.35
CLN3-230ENST00000568076 PHF1O43189 567 aaPredicted RBP17.25■□□□□ 0.35
CLN3-230ENST00000568076 AGFG2O95081 481 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 TK1P04183 234 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 ZNF585AQ6P3V2 769 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 Q6P435 159 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 SCCPDHQ8NBX0 429 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 DLL3Q9NYJ7 618 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 DKK4Q9UBT3 224 aa17.25■□□□□ 0.35
CLN3-230ENST00000568076 IGKV1D-13A0A0B4J2D9 117 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 H7C1Q1 480 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 MPPED1O15442 326 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 TUSC2O75896 110 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 IGKV1-13P0DP09 117 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 CEACAM1P13688 526 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 RAC2P15153 192 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 CBR1P16152 277 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms