RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SYT6Q5T7P8 510 aaPredicted RBP7.53□□□□□ -1.2
VPS35-206ENST00000565228 CD276Q5ZPR3 534 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 BTNL3Q6UXE8 466 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 FAM185AQ8N0U4 392 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 OR8H2Q8N162 312 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 DYNAPQ8N1N2 210 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 MS4A15Q8N5U1 240 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 SIGLECL1Q8N7X8 197 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 NANPQ8TBE9 248 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 DYRK2Q92630 601 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 LHX4Q969G2 390 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 DUX5Q96PT3 197 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 GPER1Q99527 375 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 FAM234AQ9H0X4 552 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 OR51E2Q9H255 320 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 FBLN5Q9UBX5 448 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 NUP50Q9UKX7 468 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 MRPS28Q9Y2Q9 187 aaKnown RBP7.53□□□□□ -1.2
VPS35-206ENST00000565228 A0A0U1RQK1 487 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 TRDV1A0A1B0GX56 115 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 C17orf98A8MV24 154 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 LDLRAD4O15165 306 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 SLC22A1O15245 554 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 ECDO95905 644 aaPredicted RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 LIPFP07098 398 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 CLEC2LP0C7M8 214 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 OCMP0CE72 109 aaPredicted RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 VSIG8P0DPA2 414 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 JUNBP17275 347 aaPredicted RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 PSMB9P28065 219 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 CAPZA1P52907 286 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 CLDN12P56749 244 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 RBM11P57052 281 aaKnown RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 RPL31P62899 125 aaKnown RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 ATXN7L3Q14CW9 347 aaPredicted RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 P2RY14Q15391 338 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 GRK1Q15835 563 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 TAF9Q16594 264 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 C17orf58Q2M2W7 97 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 HSD17B12Q53GQ0 312 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 FBLN7Q53RD9 439 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 SPIN3Q5JUX0 258 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 RSBN1Q5VWQ0 802 aaPredicted RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 C9orf139Q6ZV77 190 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 Q8IYB0 196 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 JAGN1Q8N5M9 183 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 FAM46BQ96A09 425 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 NICN1Q9BSH3 213 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 MRI1Q9BV20 369 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 Q9H521 79 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 ZNF696Q9H7X3 374 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 EXOSC4Q9NPD3 245 aaKnown RBP7.52□□□□□ -1.21
VPS35-206ENST00000565228 ING3Q9NXR8 418 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 ZNRD1Q9P1U0 126 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 BLOC1S6Q9UL45 172 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 KPTNQ9Y664 436 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 CMYA5Q8N3K9 4069 aa7.52□□□□□ -1.21
VPS35-206ENST00000565228 TRBV23-1A0A0A0MS06 115 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 IGHV1-69DA0A0B4J2H0 117 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 A0A1W2PQ09 198 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 FOXI3A8MTJ6 420 aaPredicted RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 TMEM14DPA8MWL7 114 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 M0R1W7 72 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 CCRL2O00421 344 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 SH2D1BO14796 132 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 DEGS1O15121 323 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 GPR37O15354 613 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 IGHV1-69P01742 117 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 ZNF44P15621 663 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 HNF1AP20823 631 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 GABRR1P24046 479 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 PRTN3P24158 256 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 GADD45AP24522 165 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 CALRP27797 417 aaKnown RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 BMXP51813 675 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 P2RX3P56373 397 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 EDDM3BP56851 147 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 IL13RA2Q14627 380 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 RSU1Q15404 277 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 C11orf91Q3C1V1 193 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 NHLRC3Q5JS37 347 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 C22orf42Q6IC83 251 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 ZNF782Q6ZMW2 699 aaPredicted RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 OSR2Q8N2R0 312 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 KIR3DL3Q8N743 410 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 PNLDC1Q8NA58 520 aaKnown RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 SUMF2Q8NBJ7 301 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 OR13A1Q8NGR1 328 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 TBC1D15Q8TC07 691 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 PHYHIPQ92561 330 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 RBMXL1Q96E39 390 aaKnown RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 YIPF6Q96EC8 236 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 Q96M66 194 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 METTL9Q9H1A3 318 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 PRDM13Q9H4Q3 707 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 UNKLQ9H9P5 680 aaKnown RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 TXNL4BQ9NX01 149 aaKnown RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 RCC2Q9P258 522 aaKnown RBP7.51□□□□□ -1.21
VPS35-206ENST00000565228 ST3GAL6Q9Y274 331 aa7.51□□□□□ -1.21
VPS35-206ENST00000565228 FAM172BPA6NC97 362 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms