RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CR1LQ2VPA4 569 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 C2orf76Q3KRA6 126 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 CD276Q5ZPR3 534 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 SIGIRRQ6IA17 410 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 C1orf229Q6ZS94 237 aaPredicted RBP17.98■□□□□ 0.47
SNX1-210ENST00000560260 RTN4RL2Q86UN3 420 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 CHST4Q8NCG5 386 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 OR4M1Q8NGD0 313 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 NICN1Q9BSH3 213 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 TMEM59Q9BXS4 323 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 LIN7BQ9HAP6 207 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 RCC2Q9P258 522 aaKnown RBP17.98■□□□□ 0.47
SNX1-210ENST00000560260 OPN4Q9UHM6 478 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 NSD1Q96L73 2696 aaPredicted RBP17.97■□□□□ 0.47
SNX1-210ENST00000560260 MTORP42345 2549 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 SONP18583 2426 aaKnown RBP17.97■□□□□ 0.47
SNX1-210ENST00000560260 WNK2Q9Y3S1 2297 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 A0A0G2JMP0 313 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 A0A0X1KG70 313 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 KIR2DS1A0A191URI9 304 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 ENSAO43768 121 aaKnown RBP17.97■□□□□ 0.47
SNX1-210ENST00000560260 ECDO95905 644 aaPredicted RBP17.97■□□□□ 0.47
SNX1-210ENST00000560260 RPS19P39019 145 aaKnown RBP17.97■□□□□ 0.47
SNX1-210ENST00000560260 EDDM3AQ14507 147 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 TCF23Q7RTU1 214 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 OR2W3Q7Z3T1 314 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 LINC00596Q86U02 117 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 CLVS1Q8IUQ0 354 aaPredicted RBP17.97■□□□□ 0.47
SNX1-210ENST00000560260 TPRX1Q8N7U7 411 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 SUMF2Q8NBJ7 301 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 OR4M2Q8NGB6 313 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 KCNG3Q8TAE7 436 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 COQ2Q96H96 371 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 TM2D1Q9BX74 207 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 LPAR5Q9H1C0 372 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 FBLN5Q9UBX5 448 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 DAPK2Q9UIK4 370 aa17.97■□□□□ 0.47
SNX1-210ENST00000560260 SERPINB10P48595 397 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 EFNB2P52799 333 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 PAX8Q06710 450 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 ATXN7L3Q14CW9 347 aaPredicted RBP17.96■□□□□ 0.46
SNX1-210ENST00000560260 C11orf91Q3C1V1 193 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 PAN3Q58A45 887 aaKnown RBP17.96■□□□□ 0.46
SNX1-210ENST00000560260 FAHD2BQ6P2I3 314 aaPredicted RBP17.96■□□□□ 0.46
SNX1-210ENST00000560260 LURAP1LQ8IV03 231 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 BPIFB2Q8N4F0 458 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 FAHD2AQ96GK7 314 aa17.96■□□□□ 0.46
SNX1-210ENST00000560260 TRBV23-1A0A0A0MS06 115 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 MEX3AA1L020 520 aaKnown RBP17.95■□□□□ 0.46
SNX1-210ENST00000560260 INAFM1C9JVW0 142 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 MGST3O14880 152 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 SNRPBP14678 240 aaKnown RBP17.95■□□□□ 0.46
SNX1-210ENST00000560260 EDDM3BP56851 147 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 ZNF273Q14593 569 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 BRICD5Q6PL45 260 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 IL17RELQ6ZVW7 336 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 FAM185AQ8N0U4 392 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 NDNFQ8TB73 568 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 PLPPR1Q8TBJ4 325 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 DPCDQ9BVM2 203 aaPredicted RBP17.95■□□□□ 0.46
SNX1-210ENST00000560260 FN1P02751 2386 aaKnown RBP17.95■□□□□ 0.46
SNX1-210ENST00000560260 DSCAML1Q8TD84 2053 aa17.95■□□□□ 0.46
SNX1-210ENST00000560260 HIVEP2P31629 2446 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A10PA6NDY2 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A18PA6NE21 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A16PA6NEW6 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A20PA6NIJ5 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A8PA6NJQ4 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A7PA6NKC0 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A22PA8MWA6 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A12PA8MX19 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A5PA8MXJ8 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A23PA8MXZ1 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 PAHP00439 452 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 IL1AP01583 271 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 CSN2P05814 226 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A15PP0C7V4 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A13PP0C7W8 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A14PP0C7W9 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FAM90A24PP0C7X0 464 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 PPIAL4GP0DN37 164 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 GATA3P23771 443 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 P2RX3P56373 397 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 RPL31P62899 125 aaKnown RBP17.94■□□□□ 0.46
SNX1-210ENST00000560260 ATAD3CQ5T2N8 411 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 BTNL3Q6UXE8 466 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 GDPD3Q7L5L3 318 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 OR5D13Q8NGL4 314 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 PPP1R35Q8TAP8 253 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 LGALS14Q8TCE9 139 aa17.94■□□□□ 0.46
SNX1-210ENST00000560260 FOXI3A8MTJ6 420 aaPredicted RBP17.93■□□□□ 0.46
SNX1-210ENST00000560260 J3QLI3 93 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 MMP9P14780 707 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 AESQ08117 197 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 FAM120AOSQ5T036 256 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 TMEM200BQ69YZ2 307 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 BARHL1Q9BZE3 327 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 SIRPDQ9H106 197 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 C7orf69Q9H7B7 122 aa17.93■□□□□ 0.46
SNX1-210ENST00000560260 TMEM160Q9NX00 188 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms