RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PLEKHJ1Q9NW61 149 aa9.48□□□□□ -0.89
USP3-218ENST00000560202 ZNF581Q9P0T4 197 aa9.48□□□□□ -0.89
USP3-218ENST00000560202 KLK11Q9UBX7 282 aa9.48□□□□□ -0.89
USP3-218ENST00000560202 ZMAT5Q9UDW3 170 aaKnown RBP9.48□□□□□ -0.89
USP3-218ENST00000560202 MAB21L2Q9Y586 359 aa9.48□□□□□ -0.89
USP3-218ENST00000560202 CHD6Q8TD26 2715 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 LINC00854A0A1B0GVQ3 168 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 A6NNC1 897 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 FABP7O15540 132 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 RBBP9O75884 186 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 OR7C1O76099 320 aaPredicted RBP9.47□□□□□ -0.89
USP3-218ENST00000560202 LPLP06858 475 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 CHATP28329 748 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 DUSP1P28562 367 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 CFHR2P36980 270 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 GDNFP39905 211 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 PMELP40967 661 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 GMFBP60983 142 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 B2MP61769 119 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 CCL8P80075 99 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 IL13RA2Q14627 380 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 PNLIPRP3Q17RR3 467 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 MPV17LQ2QL34 196 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 OLFML2AQ68BL7 652 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 ZNF57Q68EA5 555 aaPredicted RBP9.47□□□□□ -0.89
USP3-218ENST00000560202 C6orf201Q7Z4U5 140 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 LINC00596Q86U02 117 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 LRRC29Q8WV35 223 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 RBPMSQ93062 196 aaKnown RBP9.47□□□□□ -0.89
USP3-218ENST00000560202 ERGIC1Q969X5 290 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 CYYR1Q96J86 154 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 C7orf50Q9BRJ6 194 aaKnown RBP9.47□□□□□ -0.89
USP3-218ENST00000560202 GSX2Q9BZM3 304 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 HES4Q9HCC6 221 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 GCM1Q9NP62 436 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 HSF4Q9ULV5 492 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 MGAT4AQ9UM21 535 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 FLNCQ14315 2725 aa9.47□□□□□ -0.89
USP3-218ENST00000560202 A0A1W2PPR1 153 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 RPS10-NUDT3A0A1W2PQS6 291 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 SERPINE3A8MV23 424 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 H7C417 338 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 HS3ST1O14792 307 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 WNT9BO14905 357 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 PDCD6O75340 191 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 TNFRSF1AP19438 455 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 FUT3P21217 361 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 GLRA1P23415 457 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 SNRPD2P62316 118 aaKnown RBP9.46□□□□□ -0.89
USP3-218ENST00000560202 TESK1Q15569 626 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 PCGF3Q3KNV8 242 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 TOMM5Q8N4H5 51 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 NUDCD2Q8WVJ2 157 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 ST8SIA4Q92187 359 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 FAAP24Q9BTP7 215 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 EGLN1Q9GZT9 426 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 WDR13Q9H1Z4 485 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 HEXA-AS1Q9H8Q6 139 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 DECR2Q9NUI1 292 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 NLKQ9UBE8 527 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 MTFP1Q9UDX5 166 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 NUBP2Q9Y5Y2 271 aa9.46□□□□□ -0.89
USP3-218ENST00000560202 PLCE1Q9P212 2302 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 MEIS3P1A6NDR6 274 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SRRM5B3KS81 715 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 H3BUI4 141 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SSX5O60225 188 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 CA11O75493 328 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 RBMXP38159 391 aaKnown RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 HOXA4Q00056 320 aaPredicted RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 ARFRP1Q13795 201 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 ZNF146Q15072 292 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 PLA1AQ53H76 456 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 FIP1L1Q6UN15 594 aaKnown RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 ACP7Q6ZNF0 438 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 OVCH2Q7RTZ1 564 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 TRAPPC6BQ86SZ2 158 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 GCSAMQ8N6F7 178 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 Q8TCH9 128 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SPOCK3Q9BQ16 436 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SULT4A1Q9BR01 284 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SAP30LQ9HAJ7 183 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 RASL12Q9NYN1 266 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 RCC2Q9P258 522 aaKnown RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 SCP2D1Q9UJQ7 156 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 PPP1R3CQ9UQK1 317 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 MYO18BQ8IUG5 2567 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 ANKRD20A5PA0PJZ0 165 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 DEGS1O15121 323 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 GOSR1O95249 250 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 ECDO95905 644 aaPredicted RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 LHBP01229 141 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 PLA2G2AP14555 144 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 EGR1P18146 543 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 ACTBP60709 375 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 ACTG1P63261 375 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SSBP1Q04837 148 aaKnown RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 KLF9Q13886 244 aaPredicted RBP9.45□□□□□ -0.9
USP3-218ENST00000560202 SMIM21Q3B7S5 101 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SPIN3Q5JUX0 258 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms