RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ABLIM2Q6H8Q1 611 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 PSMF1Q92530 271 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 CALHM2Q9HA72 323 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 STARD10Q9Y365 291 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 DIDO1Q9BTC0 2240 aaKnown RBP11.08□□□□□ -0.64
LDLR-207ENST00000558013 ZNF816-ZNF321PA0A0X1KG74 233 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 ZNF98A6NK75 572 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 SNCAP37840 140 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 FOXO1Q12778 655 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 TMEM182Q6ZP80 229 aaPredicted RBP11.08□□□□□ -0.64
LDLR-207ENST00000558013 TUSC5Q8IXB3 177 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 EXTL1Q92935 676 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 PLEKHA2Q9HB19 425 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 GPR37O15354 613 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 DANCRP0C864 163 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 CAMLGP49069 296 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 HERV-K104P61576 105 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 CCL20P78556 96 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 HERPUD1Q15011 391 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 CT55Q8WUE5 264 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 SIGLEC12Q96PQ1 595 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 RARRES2Q99969 163 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 SPACA1Q9HBV2 294 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 FAM212BQ9NTI7 297 aaPredicted RBP11.08□□□□□ -0.64
LDLR-207ENST00000558013 PARPBPQ9NWS1 579 aa11.08□□□□□ -0.64
LDLR-207ENST00000558013 KLF2Q9Y5W3 355 aaPredicted RBP11.08□□□□□ -0.64
LDLR-207ENST00000558013 C3orf85A0A1B0GTC6 90 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 FAM166BA8MTA8 275 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 CDRT15L2A8MXV6 281 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 MPPED1O15442 326 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 ST8SIA3O43173 380 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 CYB561P49447 251 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 GFRA1P56159 465 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 GUK1Q16774 197 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 AVPI1Q5T686 147 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 SHEQ5VZ18 495 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 ZNF818PQ6ZRF7 136 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 LYPD6BQ8NI32 183 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 NOSIPQ9Y314 301 aaKnown RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 TRAV39A0A0B4J263 110 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 IGHV3-64DA0A0J9YX35 117 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 ATXN7O15265 892 aaPredicted RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 MRPL33O75394 65 aaKnown RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 CYC1P08574 325 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 OR13C7P0DN81 318 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 IZUMO4Q1ZYL8 232 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 AWAT1Q58HT5 328 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 C20orf204Q6ZNR8 217 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 TBC1D26Q86UD7 250 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 MYPOPQ86VE0 399 aaPredicted RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 LGI3Q8N145 548 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 GAPTQ8N292 157 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 KCNE4Q8WWG9 221 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 C12orf57Q99622 126 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 SUCNR1Q9BXA5 334 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 PLA2G3Q9NZ20 509 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 MTCH1Q9NZJ7 389 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 LRFN1Q9P244 771 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 PRR14LQ5THK1 2151 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 HSD17B6O14756 317 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 SYNGR1O43759 233 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 CST7O76096 145 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 TMEM50AO95807 157 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 ARG1P05089 322 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 GLAP06280 429 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 GLP1RP43220 463 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 P2RY1P47900 373 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 SNRPEP62304 92 aaKnown RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 HABP2Q14520 560 aaPredicted RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 TMEM217Q8N7C4 229 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 FAM213BQ8TBF2 198 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 TMEM171Q8WVE6 324 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 ARV1Q9H2C2 271 aa11.07□□□□□ -0.64
LDLR-207ENST00000558013 ZNF552Q9H707 407 aaPredicted RBP11.07□□□□□ -0.64
LDLR-207ENST00000558013 IGKV1-6A0A0C4DH72 117 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 A0A1W2PPE3 182 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 IGSF23A1L1A6 192 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 M0R036 132 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 SSSCA1O60232 199 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 GPR137BO60478 399 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 ITGA3P26006 1051 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 EWSR1Q01844 656 aaKnown RBP eCLIP11.06□□□□□ -0.646e-6■■■■□ 22.1
LDLR-207ENST00000558013 PRDX4Q13162 271 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 C17orf78Q8N4C9 275 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 LRTM2Q8N967 370 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 OR4D5Q8NGN0 318 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 THOC3Q96J01 351 aaKnown RBP11.06□□□□□ -0.64
LDLR-207ENST00000558013 RSRP1Q9BUV0 290 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 C1QTNF5Q9BXJ0 243 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 C19orf12Q9NSK7 152 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 A6NLC8 198 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 CYTIPO60759 359 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 UBALD1Q8TB05 177 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 NEK7Q8TDX7 302 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 SYT3Q9BQG1 590 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 UBE2J1Q9Y385 318 aaPredicted RBP11.06□□□□□ -0.64
LDLR-207ENST00000558013 KIAA2026Q5HYC2 2103 aa11.06□□□□□ -0.64
LDLR-207ENST00000558013 C7orf77A4D0Y5 90 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 ADAM20O43506 726 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 DNPH1O43598 174 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms