RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	OR5A2	Q8NGI9	324 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	LZIC	Q8WZA0	190 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	AQP3	Q92482	292 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	PIGC	Q92535	297 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	DLX4	Q92988	240 aa	Predicted RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	SPDL1	Q96EA4	605 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	REEP6	Q96HR9	211 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	COPS4	Q9BT78	406 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	ROPN1B	Q9BZX4	212 aa	Predicted RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	FGF23	Q9GZV9	251 aa	Predicted RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	ABCG5	Q9H222	651 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	OR51J1	Q9H342	316 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	KAT8	Q9H7Z6	458 aa	Known RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	ROPN1	Q9HAT0	212 aa	Predicted RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	PCDHB16	Q9NRJ7	776 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	THAP1	Q9NVV9	213 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	MRPL22	Q9NWU5	206 aa	Known RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	KIAA1456	Q9P272	454 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	LGALS13	Q9UHV8	139 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	VSIG4	Q9Y279	399 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	SIGLEC7	Q9Y286	467 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	KLK5	Q9Y337	293 aa	Predicted RBP	3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	N6AMT1	Q9Y5N5	214 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076	LINC00312	Q9Y6C7	94 aa		3.59	□□□□□ -1.83
SCFD1-223	ENST00000557076		A0A1B0GVY2	172 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	HMGB1P1	B2RPK0	211 aa	Predicted RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ZNF732	B4DXR9	585 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	FFAR1	O14842	300 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ARPC3	O15145	178 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	IDH3B	O43837	385 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ZNF737	O75373	536 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	MMP23A	O75900	390 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ACTL6B	O94805	426 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	BRI3	O95415	125 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	REN	P00797	406 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	SERPINA1	P01009	418 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	IGLV1-51	P01701	117 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	HLA-DQA2	P01906	255 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	IGF1	P05019	195 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	OR8U9	P0C7N5	309 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ARSB	P15848	533 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	TNFRSF1B	P20333	461 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ACKR3	P25106	362 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	CD34	P28906	385 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	GZMM	P51124	257 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	GRB2	P62993	217 aa	Known RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	CFHR3	Q02985	330 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	GABPB1	Q06547	395 aa	Predicted RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	TEX30	Q5JUR7	227 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	TPTE2P1	Q5T6R2	138 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	LCN1P1	Q5VSP4	162 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	TBPL2	Q6SJ96	375 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	HEPN1	Q6WQI6	88 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ZNF730	Q6ZMV8	503 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	GDPD3	Q7L5L3	318 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	RRM2B	Q7LG56	351 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	DCXR	Q7Z4W1	244 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	TGIF2LX	Q8IUE1	241 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ZDHHC21	Q8IVQ6	265 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	POC1A	Q8NBT0	407 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	UBLCP1	Q8WVY7	318 aa	Predicted RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	HPSE2	Q8WWQ2	592 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	PRRC1	Q96M27	445 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	OR4C12	Q96R67	309 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	NMNAT3	Q96T66	252 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	FNDC11	Q9BVV2	318 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	NSRP1	Q9H0G5	558 aa	Known RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	RABEP2	Q9H5N1	569 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	CCDC134	Q9H6E4	229 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	VIPAS39	Q9H9C1	493 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	SEBOX	Q9HB31	216 aa	Predicted RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	HES4	Q9HCC6	221 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	SEPSECS	Q9HD40	501 aa	Known RBP	3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	CENPM	Q9NSP4	180 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	ZNF319	Q9P2F9	582 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	CD300A	Q9UGN4	299 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	SLC22A13	Q9Y226	551 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076	TMEM5	Q9Y2B1	443 aa		3.58	□□□□□ -1.84
SCFD1-223	ENST00000557076		A0A087X0M5	115 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076		A0A1B0GX30	115 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	CXorf65	A6NEN9	183 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	OR5B21	A6NL26	309 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076		H0Y980	276 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	ZNF593	O00488	134 aa	Predicted RBP	3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	TOR1A	O14656	332 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	ARPC1B	O15143	372 aa	Known RBP	3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	SNN	O75324	88 aa	Predicted RBP	3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	NXPH2	O95156	264 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	CNIH1	O95406	144 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	OR5H8	P0DN80	308 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	HIST1H1C	P16403	213 aa	Known RBP	3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	ERP29	P30040	261 aa	Known RBP	3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	RPS27	P42677	84 aa	Known RBP	3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	GLIPR1	P48060	266 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	CX3CR1	P49238	355 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	RAB9A	P51151	201 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	EDDM3B	P56851	147 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	FXYD6P3	P58550	94 aa		3.57	□□□□□ -1.84
SCFD1-223	ENST00000557076	ERVK11-1	P61568	191 aa		3.57	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms