RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	ZDHHC23	Q8IYP9	409 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR56B2P	Q8NGI1	322 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	RXFP4	Q8TDU9	374 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	PSMF1	Q92530	271 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	APOBEC3D	Q96AK3	386 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	BOD1	Q96IK1	185 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	PBDC1	Q9BVG4	233 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	PAPOLG	Q9BWT3	736 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	PIGBOS1	A0A0B4J2F0	54 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	MMP9	P14780	707 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	PRKACA	P17612	351 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	ID4	P47928	161 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	NPBWR2	P48146	333 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	EWSR1	Q01844	656 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF266	Q14584	549 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	MKX	Q8IYA7	352 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF565	Q8N9K5	539 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	GTF3A	Q92664	365 aa	Known RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	AKR1E2	Q96JD6	320 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	EGLN1	Q9GZT9	426 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	RIMS4	Q9H426	269 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	SMDT1	Q9H4I9	107 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	TUBA4B	Q9H853	241 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	SLC7A10	Q9NS82	523 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	LRFN1	Q9P244	771 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	MEX3A	A1L020	520 aa	Known RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	CLEC18A	A5D8T8	446 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	COLCA2	A8K830	154 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	SS18L1	O75177	396 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	PITX3	O75364	302 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	SYNGR4	O95473	234 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	CRYBA1	P05813	215 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	BCL3	P20749	454 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	GNRHR	P30968	328 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	NKX2-1	P43699	371 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	LHX2	P50458	406 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF616	Q08AN1	781 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	IGSF11	Q5DX21	431 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	MRPL21	Q7Z2W9	205 aa	Known RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR2C3	Q8N628	320 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	CLEC18C	Q8NCF0	446 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR8G5	Q8NG78	346 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	IL22RA2	Q969J5	263 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	TAAR9	Q96RI9	348 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	DDA1	Q9BW61	102 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	SCRT1	Q9BWW7	348 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	STRADB	Q9C0K7	418 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	SLC25A31	Q9H0C2	315 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	PLK3	Q9H4B4	646 aa		11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	UBE2J1	Q9Y385	318 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-222	ENST00000555774	LAMA1	P25391	3075 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	NME2P1	O60361	137 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	TUSC2	O75896	110 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	IFNA4	P05014	189 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	PPT1	P50897	306 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	PDCD1	Q15116	288 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	MEX3B	Q6ZN04	569 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	TIPARP	Q7Z3E1	657 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	TBC1D26	Q86UD7	250 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF695	Q8IW36	515 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR2M7	Q8NG81	312 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	SECTM1	Q8WVN6	248 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	SLAMF9	Q96A28	289 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	SPACA1	Q9HBV2	294 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	NKX2-6	A6NCS4	301 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF724	A8MTY0	619 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	PRH1	P02810	166 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	ARR3	P36575	388 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	CLDN18	P56856	261 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	RNF212	Q495C1	297 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	CLEC9A	Q6UXN8	241 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	SELENOH	Q8IZQ5	122 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR5A2	Q8NGI9	324 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	USB1	Q9BQ65	265 aa	Known RBP	11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	PLEKHF2	Q9H8W4	249 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	ABI3	Q9P2A4	366 aa		11.59	□□□□□ -0.55
SHMT2-222	ENST00000555774	TRBV6-6	A0A0A6YYG2	114 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	UMAD1	C9J7I0	102 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	TRAPPC2L	H3BP13	241 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774		K7N7A8	449 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	ZNF883	P0CG24	379 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	HAAO	P46952	286 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	RAB5B	P61020	215 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	NHLH2	Q02577	135 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	SLC39A7	Q92504	469 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	THOC3	Q96J01	351 aa	Known RBP	11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	FGF23	Q9GZV9	251 aa	Predicted RBP	11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	LYRM2	Q9NU23	88 aa	Predicted RBP	11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	MYO7B	Q6PIF6	2116 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	UCP1	P25874	307 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	BAX	Q07812	192 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	SPINK14	Q6IE38	97 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	HIST1H2AA	Q96QV6	131 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	SPRY4	Q9C004	299 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	ATP23	Q9Y6H3	246 aa		11.58	□□□□□ -0.56
SHMT2-222	ENST00000555774	C5orf49	A4QMS7	147 aa		11.57	□□□□□ -0.56
SHMT2-222	ENST00000555774	SLC22A20	A6NK97	555 aa		11.57	□□□□□ -0.56
SHMT2-222	ENST00000555774	NEURL1	O76050	574 aa		11.57	□□□□□ -0.56
SHMT2-222	ENST00000555774	IGHV3-9	P01782	118 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms