RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 TMEM138Q9NPI0 162 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 CHCHD3Q9NX63 227 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 VPREB3Q9UKI3 123 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 LINC00312Q9Y6C7 94 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 TRBV5-7A0A0A0MS05 114 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 A0A1B0GUS0 222 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 CLPSL1A2RUU4 121 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 MEGF11A6BM72 1044 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 MAGEA13PA6NCF6 341 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 A6NHS1 94 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 H0YJX3 145 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 MMP23AO75900 390 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 CSN2P05814 226 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 CD1AP06126 327 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 PTGFRP43088 359 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 GLIPR1P48060 266 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 AQP4P55087 323 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 AANATQ16613 207 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 YIF1BQ5BJH7 314 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 C6orf141Q5SZD1 244 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 LCE2AQ5TA79 106 aaPredicted RBP8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF626Q68DY1 528 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 IZUMO2Q6UXV1 221 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 Q6ZSV7 163 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 SATL1Q86VE3 508 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 STX19Q8N4C7 294 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 NANOGP1Q8N7R0 232 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 CHST4Q8NCG5 386 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 OR51T1Q8NGJ9 327 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 OR5R1Q8NH85 324 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 SGMS2Q8NHU3 365 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 LINC01006Q8NI28 216 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 PPP1R35Q8TAP8 253 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 TNFAIP8L1Q8WVP5 186 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 CORO2AQ92828 525 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 COQ2Q96H96 371 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 SSX3Q99909 188 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 BEX1Q9HBH7 125 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 SCOCQ9UIL1 159 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 TRRAPQ9Y4A5 3859 aa8.33□□□□□ -1.08
CCDC88C-206ENST00000553437 TRAV8-7A0A075B6U6 113 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 TRAV24A0A0B4J272 114 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 BTBD17A6NE02 478 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 H3BUX3 64 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 DEGS1O15121 323 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 PIN1P1O15428 100 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 MAGEB3O15480 346 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 TSPAN9O75954 239 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF44P15621 663 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 BDKRB2P30411 391 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 OR3A4PP47883 348 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 WNT4P56705 351 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 TAS2R43P59537 309 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 KRTAP10-3P60369 221 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 SCN1BQ07699 218 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 AESQ08117 197 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 SRSF4Q08170 494 aaKnown RBP8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 IL13RA2Q14627 380 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 LRRC75BQ2VPJ9 315 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 Q499Y3 187 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 RNLSQ5VYX0 342 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 OLFML2AQ68BL7 652 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 OR13D1Q8NGV5 346 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 OR10K1Q8NGX5 313 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 WFDC12Q8WWY7 111 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 SGCDQ92629 289 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 CPNE2Q96FN4 548 aaPredicted RBP8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 GPER1Q99527 375 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 PPA2Q9H2U2 334 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 C16orf95Q9H693 158 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 UBE2J1Q9Y385 318 aaPredicted RBP8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 PCDHGB5Q9Y5G0 923 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 SESN1Q9Y6P5 492 aa8.32□□□□□ -1.08
CCDC88C-206ENST00000553437 IGHV2-26A0A0B4J1V2 119 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 PNMA8CA0A1B0GUJ8 204 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 A0A1W2PPK0 400 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 ODAMA1E959 279 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 MYL12BO14950 172 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CLPXO76031 633 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CDRT1O95170 752 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 ARG1P05089 322 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CDK1P06493 297 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CGB3P0DN86 165 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CGB7P0DN87 165 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CELP19835 753 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 FSTP19883 344 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF93P35789 620 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 TGFBR2P37173 567 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 GDNFP39905 211 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 LGALS4P56470 323 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 PROK1P58294 105 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 PPP3R1P63098 170 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 RSU1Q15404 277 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 PIGYQ3MUY2 71 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 NHLRC3Q5JS37 347 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 DDI2Q5TDH0 399 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 BAIAP2L2Q6UXY1 529 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 HEPN1Q6WQI6 88 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 LYPD6Q86Y78 171 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 MALSU1Q96EH3 234 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms