RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CCR5P51681 352 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 SPCS3P61009 180 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 RNF4P78317 190 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 P2RY6Q15077 328 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 MPV17LQ2QL34 196 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PIGYQ3MUY2 71 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 H1FNTQ75WM6 255 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 NAT6Q93015 286 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 DDIT4LQ96D03 193 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 FAM210BQ96KR6 192 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PBDC1Q9BVG4 233 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 DECR2Q9NUI1 292 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PLEKHJ1Q9NW61 149 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PLA2G3Q9NZ20 509 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 RARRES3Q9UL19 164 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 MMACHCQ9Y4U1 282 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 RIF1Q5UIP0 2472 aaKnown RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 CACNA1DQ01668 2161 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 SMG1Q96Q15 3661 aaKnown RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 IGHV1OR21-1A0A087WYE8 117 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV3D-11A0A0A0MRZ8 115 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 A0A1B0GUS0 222 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF850A8MQ14 1090 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 C3orf80F5H4A9 247 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PHF1O43189 567 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 SSSCA1O60232 199 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 CYTIPO60759 359 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 SCGNO76038 276 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PTBP3O95758 552 aaKnown RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 MMP7P09237 267 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 OR4A8P0C604 315 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 NR2C1P13056 603 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 FASLGP48023 281 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 FGF8P55075 233 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 C17orf67Q0P5P2 114 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 HNF4GQ14541 408 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 IZUMO4Q1ZYL8 232 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 FAM90A2PQ658T7 463 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 OR5C1Q8NGR4 320 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 OR1N1Q8NGS0 311 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 CLDND2Q8NHS1 167 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 NEK7Q8TDX7 302 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 LURAP1Q96LR2 239 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 SCGB3A2Q96PL1 93 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 C2orf88Q9BSF0 95 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 URM1Q9BTM9 101 aaKnown RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 MRPL37Q9BZE1 423 aaKnown RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 NAA60Q9H7X0 242 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 DOCK11Q5JSL3 2073 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 TTC28Q96AY4 2481 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 A0A087WZY1 265 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 H3BP45 60 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF728P0DKX0 622 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 GZMHP20718 246 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 LTBRP36941 435 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 DCAF7P61962 342 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 RAB11AP62491 216 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF154Q13106 437 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 C9orf135Q5VTT2 229 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 OR2C3Q8N628 320 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 NECAP1Q8NC96 275 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 SMRP1Q8NCR6 262 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 OR10G3Q8NGC4 313 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 OR4D5Q8NGN0 318 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 OR4X1Q8NH49 305 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 OR2AE1Q8NHA4 323 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 TVP23CQ96ET8 276 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 SNHG12Q9BXW3 62 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF665Q9H7R5 613 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 PLEK2Q9NYT0 353 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 OR14J1Q9UGF5 321 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 STRAPQ9Y3F4 350 aaKnown RBP4.2□□□□□ -1.74
LIMA1-214ENST00000552783 A0A087WWC5 75 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 A0A1B0GW64 132 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 A0A1W2PR80 420 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 A6NIZ1 184 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 LIPT2A6NK58 231 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF705GA8MUZ8 300 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-214ENST00000552783 NPIPA2E9PIF3 369 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 NPIPA3F8WFD2 350 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 TSTD3H0UI37 97 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 ST8SIA3O43173 380 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 PIAS2O75928 621 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 IGHV3-9P01782 118 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 HLA-HP01893 362 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 CD33P20138 364 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 SPINK2P20155 84 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 DYNLT3P51808 116 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 RAP1BP61224 184 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 GABREP78334 506 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 COL10A1Q03692 680 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 MYBPHQ13203 477 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 DAZAP2Q15038 168 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-214ENST00000552783 SNAI3Q3KNW1 292 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 PHYHD1Q5SRE7 291 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 AKR1C8PQ5T2L2 129 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 LIAT1Q6ZQX7 453 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 SYT13Q7L8C5 426 aa4.2□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF837Q96EG3 531 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM68Q96MH6 324 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms