RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NFYBP25208 207 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 CDX1P47902 265 aaPredicted RBP13.32□□□□□ -0.28
VPS29-204ENST00000548259 POU3F4P49335 361 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 SNU13P55769 128 aaKnown RBP13.32□□□□□ -0.28
VPS29-204ENST00000548259 MTCP1P56278 107 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 AESQ08117 197 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 MEPCEQ7L2J0 689 aaKnown RBP13.32□□□□□ -0.28
VPS29-204ENST00000548259 SLC35F2Q8IXU6 374 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 OR8H3Q8N146 312 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 ARHGAP24Q8N264 748 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 ZNF565Q8N9K5 539 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 HAVCR2Q8TDQ0 301 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 LRGUKQ96M69 825 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 SLC25A19Q9HC21 320 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 IL36RNQ9UBH0 155 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 GSTK1Q9Y2Q3 226 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 OR2H2O95918 312 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 ANXA8P13928 327 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 ZNF44P15621 663 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 HOXB6P17509 224 aaKnown RBP13.31□□□□□ -0.28
VPS29-204ENST00000548259 BCL3P20749 454 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 PRKACBP22694 351 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 GLIPR1P48060 266 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 NPBWR2P48146 333 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 FOXE3Q13461 319 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 GPR50Q13585 617 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 HNF4GQ14541 408 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 ODF4Q2M2E3 257 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 ZNF260Q3ZCT1 412 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 KRBOX4Q5JUW0 171 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 FAM27D1Q5T7N8 215 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 YIPF7Q8N8F6 280 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 CHST4Q8NCG5 386 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 HMG20AQ9NP66 347 aa13.31□□□□□ -0.28
VPS29-204ENST00000548259 CHCHD3Q9NX63 227 aaKnown RBP13.31□□□□□ -0.28
VPS29-204ENST00000548259 CCDC182A6NF36 153 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 RPP14O95059 124 aaKnown RBP13.3□□□□□ -0.28
VPS29-204ENST00000548259 RPLP1P05386 114 aaKnown RBP13.3□□□□□ -0.28
VPS29-204ENST00000548259 CSN2P05814 226 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 ELANEP08246 267 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 TMEM236Q5W0B7 351 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 PLEKHG7Q6ZR37 379 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 FAM107BQ9H098 131 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 RHOFQ9HBH0 211 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 CLN6Q9NWW5 311 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 SCOCQ9UIL1 159 aa13.3□□□□□ -0.28
VPS29-204ENST00000548259 KBTBD11-OT1A0A1B0GTJ5 212 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 NCBP2LA6PVI3 153 aaKnown RBP13.29□□□□□ -0.28
VPS29-204ENST00000548259 IGKV1D-33P01593 117 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 IGKV1-33P01594 117 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 GDNFP39905 211 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 SCN1BQ07699 218 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 TRIM25Q14258 630 aaKnown RBP13.29□□□□□ -0.28
VPS29-204ENST00000548259 DEFB136Q30KP8 78 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 LHFPL2Q6ZUX7 228 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 DNAJC9Q8WXX5 260 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 NEK6Q9HC98 313 aa13.29□□□□□ -0.28
VPS29-204ENST00000548259 MRM2Q9UI43 246 aaKnown RBP13.29□□□□□ -0.28
VPS29-204ENST00000548259 J3QR06 171 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 CCRL2O00421 344 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 MAGEB4O15481 346 aaPredicted RBP13.28□□□□□ -0.28
VPS29-204ENST00000548259 MPZL2O60487 215 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 CALCBP10092 127 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 C21orf33P30042 268 aaPredicted RBP13.28□□□□□ -0.28
VPS29-204ENST00000548259 TGIF2LXQ8IUE1 241 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 OR10X1Q8NGY0 326 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 C4orf3Q8WVX3 66 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 COMMD4Q9H0A8 199 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 LIN7CQ9NUP9 197 aaKnown RBP13.28□□□□□ -0.28
VPS29-204ENST00000548259 ING3Q9NXR8 418 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 DSCAML1Q8TD84 2053 aa13.28□□□□□ -0.28
VPS29-204ENST00000548259 A0A1W2PPI3 338 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 H3BSH0 61 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 UBCP0CG48 685 aaKnown RBP13.27□□□□□ -0.29
VPS29-204ENST00000548259 VDAC1P21796 283 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 GPR12P47775 334 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 PDZK1IP1Q13113 114 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 CATSPERDQ86XM0 798 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 SBSPONQ8IVN8 264 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 RNF152Q8N8N0 203 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 SPSB1Q96BD6 273 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 KIRREL1Q96J84 757 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 ABCG5Q9H222 651 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 ARL8BQ9NVJ2 186 aa13.27□□□□□ -0.29
VPS29-204ENST00000548259 DYNC2H1Q8NCM8 4307 aaKnown RBP13.26□□□□□ -0.29
VPS29-204ENST00000548259 DEGS1O15121 323 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 SNX3O60493 162 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 FAM107AO95990 144 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 OR8U8P0C7N1 319 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 OR5H8P0DN80 308 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 ZNF20P17024 532 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 GLP1RP43220 463 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 CRISP1P54107 249 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 C17orf58Q2M2W7 97 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 SLC16A12Q6ZSM3 486 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 UTS2BQ765I0 119 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 ZNF429Q86V71 674 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 GID4Q8IVV7 300 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 CITED4Q96RK1 184 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 RASL11BQ9BPW5 248 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms