RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 IGSF23A1L1A6 192 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 CXorf65A6NEN9 183 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 LINC01387J3KSC0 135 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 CLN5O75503 358 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 C1QL1O75973 258 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 HBE1P02100 147 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 CCL3P10147 92 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 FGF5P12034 268 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 CBR1P16152 277 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 HOXA6P31267 233 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 HTR5AP47898 357 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 SSR4P51571 173 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF774Q6NX45 483 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 SPSB3Q6PJ21 355 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 OR11L1Q8NGX0 322 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 KCNE4Q8WWG9 221 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 SPSB4Q96A44 273 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 MUCL1Q96DR8 90 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 RBMXL1Q96E39 390 aaKnown RBP11.86□□□□□ -0.51
VPS33A-208ENST00000543633 IMMP1LQ96LU5 166 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 CCDC74BQ96LY2 380 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 EML6Q6ZMW3 1958 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 A0A1W2PQM1 296 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 RPL36A-HNRNPH2H7BZ11 118 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 PPIHO43447 177 aaKnown RBP11.85□□□□□ -0.51
VPS33A-208ENST00000543633 CBR3O75828 277 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 OR13C7P0DN81 318 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 CCL7P80098 99 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 TRIM61Q5EBN2 209 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF506Q5JVG8 444 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 GUSBP11Q6P575 273 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.85□□□□□ -0.51
VPS33A-208ENST00000543633 SAXO1Q8IYX7 474 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 OR10G4Q8NGN3 311 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 C20orf24Q9BUV8 137 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF581Q9P0T4 197 aa11.85□□□□□ -0.51
VPS33A-208ENST00000543633 TECTAO75443 2155 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 NKX2-6A6NCS4 301 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ARG1P05089 322 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 TDGF1P13385 188 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 DAOP14920 347 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 NQO2P16083 231 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF32P17041 273 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 EPHA8P29322 1005 aaPredicted RBP11.84□□□□□ -0.51
VPS33A-208ENST00000543633 CLDN15P56746 228 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 RAB2AP61019 212 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 VAMP2P63027 116 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ABLIM2Q6H8Q1 611 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ADAM5Q6NVV9 412 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF695Q8IW36 515 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 TMEM252Q8N6L7 170 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 DYRK2Q92630 601 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 SRXN1Q9BYN0 137 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 PARPBPQ9NWS1 579 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 VPS13AQ96RL7 3174 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 CCDC163A0A0D9SF12 145 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 LY6G6EA0A0G2JKS1 128 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 TNFSF11O14788 317 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 SRP19P09132 144 aaKnown RBP11.84□□□□□ -0.51
VPS33A-208ENST00000543633 COX6A1P12074 109 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 HOXA5P20719 270 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 UCP1P25874 307 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 IL11RAQ14626 422 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 TGIF1Q15583 401 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 NRN1LQ496H8 165 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 PLCXD3Q63HM9 321 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 MEX3BQ6ZN04 569 aaKnown RBP11.84□□□□□ -0.51
VPS33A-208ENST00000543633 SELENOHQ8IZQ5 122 aaKnown RBP11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF837Q96EG3 531 aaPredicted RBP11.84□□□□□ -0.51
VPS33A-208ENST00000543633 OR2H1Q9GZK4 316 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF442Q9H7R0 627 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 UBE2J1Q9Y385 318 aaPredicted RBP11.84□□□□□ -0.51
VPS33A-208ENST00000543633 U3KQA8 63 aa11.84□□□□□ -0.51
VPS33A-208ENST00000543633 FAM24AA6NFZ4 105 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 ZNF724A8MTY0 619 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 IGHV2-70P01814 119 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 FBP1P09467 338 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 CTXN2P0C2S0 81 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 VDAC1P21796 283 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 SRD5A2P31213 254 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 NMSQ5H8A3 153 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 Q6ZPA2 131 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 SLC35E3Q7Z769 313 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 TBC1D26Q86UD7 250 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 OR13D1Q8NGV5 346 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 PRDM14Q9GZV8 571 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 WNT5BQ9H1J7 359 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 MIOXQ9UGB7 285 aa11.83□□□□□ -0.52
VPS33A-208ENST00000543633 PUS1Q9Y606 427 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS33A-208ENST00000543633 TRAV1-1A0A0B4J248 108 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 ZNF716A6NP11 495 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 B4DEV8 164 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 H3BQ15 152 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 WRBO00258 174 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 GATCO43716 136 aaKnown RBP11.82□□□□□ -0.52
VPS33A-208ENST00000543633 TUSC2O75896 110 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 SCAF4O95104 1147 aaKnown RBP11.82□□□□□ -0.52
VPS33A-208ENST00000543633 TK1P04183 234 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 WNT2P09544 360 aa11.82□□□□□ -0.52
VPS33A-208ENST00000543633 SLC25A6P12236 298 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms