RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LHX6Q9UPM6 363 aa8.48□□□□□ -1.05
SS18-205ENST00000542420 TMED3Q9Y3Q3 217 aa8.48□□□□□ -1.05
SS18-205ENST00000542420 R4GN57 208 aa8.48□□□□□ -1.05
SS18-205ENST00000542420 PCNX2A6NKB5 2137 aa8.48□□□□□ -1.05
SS18-205ENST00000542420 FREM1Q5H8C1 2179 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 LRP5LA4QPB2 252 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 ATG12O94817 140 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 SELEP16581 610 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 TNFSF10P50591 281 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 PIGPP57054 158 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 HERV-K104P61576 105 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 ZNF880Q6PDB4 577 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 SLC22A25Q6T423 547 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 MOB1BQ7L9L4 216 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.47□□□□□ -1.05
SS18-205ENST00000542420 CALHM1Q8IU99 346 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 FAM71E2Q8N5Q1 922 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 C18orf12Q96KH6 178 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 OR10C1Q96KK4 312 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 SLC5A7Q9GZV3 580 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 OR51M1Q9H341 326 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 ZNF552Q9H707 407 aaPredicted RBP8.47□□□□□ -1.05
SS18-205ENST00000542420 CLCF1Q9UBD9 225 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 E5RGE8 158 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 NPIPB11E5RHQ5 1161 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 AQP7O14520 342 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 DEDDO75618 318 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 ADAP1O75689 374 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 IL18BPO95998 194 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 F10P00742 488 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 HLA-HP01893 362 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 SPP1P10451 314 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 CD79AP11912 226 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 RAB32Q13637 225 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 DAZAP2Q15038 168 aaPredicted RBP8.47□□□□□ -1.05
SS18-205ENST00000542420 GUSBP1Q15486 140 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 GABRA6Q16445 453 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 SWI5Q1ZZU3 235 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 TBC1D28Q2M2D7 210 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 GPR157Q5UAW9 335 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 RBMS3Q6XE24 437 aaKnown RBP8.47□□□□□ -1.05
SS18-205ENST00000542420 GLYATL2Q8WU03 294 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 RTN4IP1Q8WWV3 396 aaPredicted RBP8.47□□□□□ -1.05
SS18-205ENST00000542420 EXTL1Q92935 676 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 IL22RA2Q969J5 263 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 HDHD3Q9BSH5 251 aaPredicted RBP8.47□□□□□ -1.05
SS18-205ENST00000542420 ZNF442Q9H7R0 627 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 NSG2Q9Y328 171 aa8.47□□□□□ -1.05
SS18-205ENST00000542420 TUSC2O75896 110 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 CDS2O95674 445 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 KNG1P01042 644 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 DUSP1P28562 367 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 FCGR2CP31995 323 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 EIF2S3P41091 472 aaKnown RBP8.46□□□□□ -1.05
SS18-205ENST00000542420 IAH1Q2TAA2 248 aaPredicted RBP8.46□□□□□ -1.05
SS18-205ENST00000542420 FAM74A1Q5RGS3 127 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 GGNBP1Q5YKI7 109 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 INO80CQ6PI98 192 aaPredicted RBP8.46□□□□□ -1.05
SS18-205ENST00000542420 IL34Q6ZMJ4 242 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 LDLRAD3Q86YD5 345 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 ZNF565Q8N9K5 539 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 MAFIPQ8WZ33 124 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 SLC39A7Q92504 469 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 SPIN2AQ99865 258 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 SPIN2BQ9BPZ2 258 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 SEBOXQ9HB31 216 aaPredicted RBP8.46□□□□□ -1.05
SS18-205ENST00000542420 SPRR3Q9UBC9 169 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 PTPRBP23467 1997 aa8.46□□□□□ -1.05
SS18-205ENST00000542420 ARGFXA6NJG6 315 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 ZNF732B4DXR9 585 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 J3QT63 122 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 JTBO76095 146 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 OR7C1O76099 320 aaPredicted RBP8.46□□□□□ -1.06
SS18-205ENST00000542420 PPYP01298 95 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 BCL3P20749 454 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 UNQ6126/PRO20091Q6UXV3 157 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 PRRX2Q99811 253 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 OBP2BQ9NPH6 170 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 SLC2A9Q9NRM0 540 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 PCDHB10Q9UN67 800 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 LIPGQ9Y5X9 500 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 POMT1Q9Y6A1 747 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 ATP23Q9Y6H3 246 aa8.46□□□□□ -1.06
SS18-205ENST00000542420 MED12LQ86YW9 2145 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 A0A096LPE4 126 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 TRAV17A0A0B4J275 112 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 A0A1W2PPZ6 126 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 TMEM210A6NLX4 147 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 TRDCB7Z8K6 153 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 IGHV3-9P01782 118 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 TK1P04183 234 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 HKR1P10072 659 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 MMP9P14780 707 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 ZNF14P17017 642 aaPredicted RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 PI3P19957 117 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 P2RY1P47900 373 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 DEFA5Q01523 94 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 RELQ04864 619 aaPredicted RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 ATXN7L3Q14CW9 347 aaPredicted RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 TGIF1Q15583 401 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms