RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 UMAD1C9J7I0 102 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 PPP1R2P9O14990 202 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TSPAN15O95858 294 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 RPL4P36578 427 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 CDKN2AP42771 156 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 RPL18Q07020 188 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TAF9Q16594 264 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 Q499Y3 187 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 LDLRAD2Q5SZI1 272 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 LINC01590Q5TEZ4 76 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 RPL7L1Q6DKI1 246 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 SLC35E3Q7Z769 313 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 ZNF676Q8N7Q3 588 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 OR10AC1Q8NH08 325 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TMEM106AQ96A25 262 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 DNAJA3Q96EY1 480 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TSPAN32Q96QS1 320 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TAF9BQ9HBM6 251 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 PRR13Q9NZ81 148 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 MYOTQ9UBF9 498 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 NXT1Q9UKK6 140 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 IKZF2Q9UKS7 526 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 ASCC3Q8N3C0 2202 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 ZDBF2Q9HCK1 2354 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TRAV36DV7A0A075B6V5 113 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 IGLV3-32A0A0A0MS00 114 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 SMCO3A2RU48 225 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 ANKUB1A6NFN9 424 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TVP23AA6NH52 213 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 K7ERU9 68 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 FCGR3AP08637 254 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 COX6A1P12074 109 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 CHRNB4P30926 498 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 RPL29P47914 159 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 POLR2HP52434 150 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 ERVFRD-1P60508 538 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 S100A10P60903 97 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 ALG10Q5BKT4 473 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 DRAM2Q6UX65 266 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 OR51A4Q8NGJ6 313 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 GPR148Q8TDV2 347 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 SLC25A43Q8WUT9 341 aaPredicted RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 NTNG2Q96CW9 530 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 SMIM3Q9BZL3 60 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 CST9LQ9H4G1 147 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 C19orf25Q9UFG5 118 aaPredicted RBP6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 PCSK5Q92824 1860 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 BDP1A6H8Y1 2624 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 TMED7-TICAM2A0A0A6YYA0 188 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 MED19A0JLT2 244 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CDX4O14627 284 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 GP1BBP13224 206 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CD59P13987 128 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CSNK2A1P68400 391 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 PLAC9Q5JTB6 97 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 PHYHD1Q5SRE7 291 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 FAM220AQ7Z4H9 259 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 HIST3H2BBQ8N257 126 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 ADAD2Q8NCV1 583 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CSNK2A3Q8NEV1 391 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 OR4C5Q8NGB2 326 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CMBLQ96DG6 245 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 SEH1LQ96EE3 360 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 IMMP1LQ96LU5 166 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 RNF126Q9BV68 326 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 SLC2A9Q9NRM0 540 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 LRFN1Q9P244 771 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 PCNX3Q9H6A9 2034 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 AQP7P3A6NL99 342 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 ZNF727A8MUV8 499 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 PRR32B1ATL7 298 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 FTCDNL1E5RQL4 147 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 H0YIZ8 118 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 ZFAND5O76080 213 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CST4P01036 141 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 CELA2AP08217 269 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 SOD3P08294 240 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 GZMBP10144 247 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 ZBTB25P24278 435 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 TIMP3P35625 211 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 SLC25A1P53007 311 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 SUMO3P55854 103 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 NKX6-1P78426 367 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 NAAAQ02083 359 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 C4orf17Q53FE4 359 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 EIF5AL1Q6IS14 154 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 OR14K1Q8NGZ2 314 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 ADAMTS17Q8TE56 1095 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 FAM3DQ96BQ1 224 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 PIMREGQ9BSJ6 248 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 OR5AC2Q9NZP5 309 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 PITPNC1Q9UKF7 332 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 HS3ST3B1Q9Y662 390 aa6.97□□□□□ -1.29
PDLIM5-221ENST00000542407 TRAV25A0A0B4J276 109 aa6.96□□□□□ -1.29
PDLIM5-221ENST00000542407 DVL1O14640 695 aa6.96□□□□□ -1.29
PDLIM5-221ENST00000542407 RPS27P42677 84 aaKnown RBP6.96□□□□□ -1.29
PDLIM5-221ENST00000542407 CTXN1P60606 82 aa6.96□□□□□ -1.29
PDLIM5-221ENST00000542407 RAB35Q15286 201 aa6.96□□□□□ -1.29
PDLIM5-221ENST00000542407 HMGN3Q15651 99 aa6.96□□□□□ -1.29
PDLIM5-221ENST00000542407 EMC4Q5J8M3 183 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms