RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 RGCCQ9H4X1 137 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 BCO1Q9HAY6 547 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 MED9Q9NWA0 146 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 FOXJ2Q9P0K8 574 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 FOXD3Q9UJU5 478 aaPredicted RBP11.69□□□□□ -0.54
PTPN1-202ENST00000541713 PURGQ9UJV8 347 aaKnown RBP11.69□□□□□ -0.54
PTPN1-202ENST00000541713 RNF150Q9ULK6 438 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 ADGRG4Q8IZF6 3080 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 A0A0U1RQV5 110 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 CA6P23280 308 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 RAB1AP62820 205 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 Q6ZPA2 131 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 GAPTQ8N292 157 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 GLYATL2Q8WU03 294 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 NTNG2Q96CW9 530 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 NAA60Q9H7X0 242 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF107Q9UII5 783 aaPredicted RBP11.69□□□□□ -0.54
PTPN1-202ENST00000541713 KCNS2Q9ULS6 477 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 A6NLC8 198 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 ADAM20O43506 726 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 CD37P11049 281 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 CHATP28329 748 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 PMP22Q01453 160 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 PRDX4Q13162 271 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 IQCF2Q8IXL9 164 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 MMP26Q9NRE1 261 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 PPP1R3CQ9UQK1 317 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 MED12LQ86YW9 2145 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 LRRC3CA6NJW4 275 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF716A6NP11 495 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 HLA-GP17693 338 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 CCL1P22362 96 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 FAM24BQ8N5W8 94 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 IL22RA1Q8N6P7 574 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 PHYHIPLQ96FC7 376 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 IGKV1D-13A0A0B4J2D9 117 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 SIRPB1O00241 398 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 SNAPINO95295 136 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 IGKV1-13P0DP09 117 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 IAPPP10997 89 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 CEBPDP49716 269 aaPredicted RBP11.68□□□□□ -0.54
PTPN1-202ENST00000541713 CLDN23Q96B33 292 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 HIST1H2AAQ96QV6 131 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 IGLV3-32A0A0A0MS00 114 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 A0A1W2PPE2 198 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 CRYM-AS1A6NIL9 109 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 VAMP2P63027 116 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 CCL20P78556 96 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 C10orf128Q5T292 105 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 TBC1D26Q86UD7 250 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 ADPRHL1Q8NDY3 354 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 OR1K1Q8NGR3 316 aa11.68□□□□□ -0.54
PTPN1-202ENST00000541713 NCKAP5O14513 1909 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 HEATR1Q9H583 2144 aaKnown RBP11.67□□□□□ -0.54
PTPN1-202ENST00000541713 A0A1W2PPH5 198 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 RHBDL1O75783 438 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 PPYP01298 95 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 S100A6P06703 90 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF806P0C7X5 589 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 GNMTQ14749 295 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 C6orf15Q6UXA7 325 aaPredicted RBP11.67□□□□□ -0.54
PTPN1-202ENST00000541713 SLC16A13Q7RTY0 426 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 ADAMTS17Q8TE56 1095 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 PRSS50Q9UI38 385 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 MMP24Q9Y5R2 645 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 CEP295Q9C0D2 2601 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF727A8MUV8 499 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 DEDDO75618 318 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 APOC1P02654 83 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 GRPP07492 148 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 CRYGSP22914 178 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 B3GALT5-AS1P59052 145 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 ERVS71-1P61550 626 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 TMEM267Q0VDI3 215 aaPredicted RBP11.67□□□□□ -0.54
PTPN1-202ENST00000541713 EIF5AL1Q6IS14 154 aaKnown RBP11.67□□□□□ -0.54
PTPN1-202ENST00000541713 AQP10Q96PS8 301 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 C12orf57Q99622 126 aa11.67□□□□□ -0.54
PTPN1-202ENST00000541713 GJE1A6NN92 205 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 PROB1E7EW31 1015 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ST8SIA3O43173 380 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 PDCD6O75340 191 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 WISP2O76076 250 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 CST4P01036 141 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 CTSDP07339 412 aaPredicted RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 SRD5A2P31213 254 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF133P52736 654 aaPredicted RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF154Q13106 437 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 CLEC12BQ2HXU8 276 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 SPINK9Q5DT21 86 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 DEFB123Q8N688 67 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 OR2G3Q8NGZ4 309 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 RCC2Q9P258 522 aaKnown RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 ABCA1O95477 2261 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 SPTAN1Q13813 2472 aaKnown RBP11.66□□□□□ -0.54
PTPN1-202ENST00000541713 FGF16O43320 207 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 TXNL1O43396 289 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 WDR1O75083 606 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 FUT3P21217 361 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 TMEM187Q14656 261 aa11.66□□□□□ -0.54
PTPN1-202ENST00000541713 KCNMB1Q16558 191 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms