RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PLEKHF2Q9H8W4 249 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 UFSP2Q9NUQ7 469 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 RP1L1Q8IWN7 2480 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-213ENST00000540338 CEP192Q8TEP8 1941 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 J3QT63 122 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 KCNAB3O43448 404 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 AKR1C8PQ5T2L2 129 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 BEND4Q6ZU67 534 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 SAXO1Q8IYX7 474 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 ZFP62Q8NB50 900 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-213ENST00000540338 MARVELD3Q96A59 401 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 LRRC46Q96FV0 321 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 RTBDNQ9BSG5 229 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-213ENST00000540338 IL36GQ9NZH8 169 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 DNAJC13O75165 2243 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 RPS10-NUDT3A0A1W2PQS6 291 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 MPPED1O15442 326 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 TNFSF12O43508 249 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 PTGER4P35408 488 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 RTN4RL2Q86UN3 420 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 OR10C1Q96KK4 312 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 C1orf147Q96MC9 270 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-213ENST00000540338 LINC00052Q96N35 136 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 LAMA3Q16787 3333 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 SHOXO15266 292 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 SIGIRRQ6IA17 410 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 DBX2Q6ZNG2 339 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 CD300LFQ8TDQ1 290 aa9.3□□□□□ -0.92
CLIP1-213ENST00000540338 ZNF629Q9UEG4 869 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-213ENST00000540338 CRYM-AS1A6NIL9 109 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 CDK2AP1O14519 115 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 TUSC2O75896 110 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 SNAPINO95295 136 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 PEA15Q15121 130 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 CALHM1Q8IU99 346 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 RNF122Q9H9V4 155 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 OR5AC2Q9NZP5 309 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 TECTAO75443 2155 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 MMP7P09237 267 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 GABRA2P47869 451 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 NAAAQ02083 359 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 TSC22D1Q15714 1073 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 RSPO1Q2MKA7 263 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 INO80CQ6PI98 192 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 UQCC3Q6UW78 93 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 FAM214BQ7L5A3 538 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 LYZL2Q7Z4W2 148 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 LYPD6Q86Y78 171 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 FAM219AQ8IW50 185 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 OR1S2Q8NGQ3 325 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 GP6Q9HCN6 339 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 ERRFI1Q9UJM3 462 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 GALR2O43603 387 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 WDR1O75083 606 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 CATR1Q13166 79 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 CSRP2Q16527 193 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 GPR157Q5UAW9 335 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 RPL7L1Q6DKI1 246 aaKnown RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 VHLLQ6RSH7 139 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 MOB1BQ7L9L4 216 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 LINC00596Q86U02 117 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 ZNF488Q96MN9 340 aa9.29□□□□□ -0.92
CLIP1-213ENST00000540338 RCL1Q9Y2P8 373 aaKnown RBP9.29□□□□□ -0.92
CLIP1-213ENST00000540338 FER1L5A0AVI2 2057 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 IQCF2Q8IXL9 164 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 SUMF2Q8NBJ7 301 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 OR2J1Q9GZK6 312 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 FBXL17Q9UF56 701 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 PPP1R3CQ9UQK1 317 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 SYNGR1O43759 233 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 MDH2P40926 338 aaKnown RBP9.28□□□□□ -0.92
CLIP1-213ENST00000540338 TMEM33P57088 247 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 MSMO1Q15800 293 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 IGSF11Q5DX21 431 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 LILRB2Q8N423 598 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 TMEM217Q8N7C4 229 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 TMEM230Q96A57 120 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 MOB3AQ96BX8 217 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 PARP12Q9H0J9 701 aaKnown RBP9.28□□□□□ -0.92
CLIP1-213ENST00000540338 MAGT1Q9H0U3 335 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 MED9Q9NWA0 146 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 NXPH3O95157 252 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 IL13RA2Q14627 380 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 Q6ZRG5 221 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 TBC1D26Q86UD7 250 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 C17orf78Q8N4C9 275 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 SLC25A40Q8TBP6 338 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 LIPGQ9Y5X9 500 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 SVILO95425 2214 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 RAB19A4D1S5 217 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 CDIPTO14735 213 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 SSSCA1O60232 199 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 NTF4P34130 210 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 FOXG1P55316 489 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-213ENST00000540338 HGFACQ04756 655 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 PLA2G2CQ5R387 149 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 LHFPL1Q86WI0 220 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 FAM213BQ8TBF2 198 aa9.28□□□□□ -0.92
CLIP1-213ENST00000540338 IGKV1-27A0A075B6S5 117 aa9.27□□□□□ -0.93
CLIP1-213ENST00000540338 RNF222A6NCQ9 220 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms