RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RHOFQ9HBH0 211 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 KRT84Q9NSB2 600 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 MOB4Q9Y3A3 225 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 HSPE1-MOB4S4R3N1 261 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 IGKV1-12A0A0C4DH73 117 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 FAM172BPA6NC97 362 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 TOR1AO14656 332 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 IGKV1D-12P01611 117 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 ISG15P05161 165 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 FAM106CPP0CH98 169 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 CALCBP10092 127 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 KIR3DL2P43630 455 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 PRRX1P54821 245 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 AESQ08117 197 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 KPNB1Q14974 876 aaKnown RBP10.75□□□□□ -0.69
SS18-204ENST00000539244 C17orf58Q2M2W7 97 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 TMEM244Q5VVB8 128 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 RDH10Q8IZV5 341 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 CHST4Q8NCG5 386 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 CCDC197Q8NCU1 140 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 OR4D6Q8NGJ1 314 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 COQ2Q96H96 371 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 MBOAT4Q96T53 435 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 P2RX4Q99571 388 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 PCDHB16Q9NRJ7 776 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 ZFP57Q9NU63 452 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 ENOPH1Q9UHY7 261 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 POMPQ9Y244 141 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 GSTK1Q9Y2Q3 226 aa10.75□□□□□ -0.69
SS18-204ENST00000539244 ZNF729A6NN14 1252 aaPredicted RBP10.74□□□□□ -0.69
SS18-204ENST00000539244 MT-ND2P03891 347 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 CGB3P0DN86 165 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 CGB7P0DN87 165 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 MYCNOSP40205 109 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 SNU13P55769 128 aaKnown RBP10.74□□□□□ -0.69
SS18-204ENST00000539244 TMED1Q13445 227 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 DNAL1Q4LDG9 190 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 C9orf152Q5JTZ5 239 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 Q6P435 159 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 OR2W3Q7Z3T1 314 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 SAXO1Q8IYX7 474 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 OR10H4Q8NGA5 316 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 OR9G1Q8NH87 305 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 CHPT1Q8WUD6 406 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 KIRREL1Q96J84 757 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 OPALINQ96PE5 141 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 ZNF649Q9BS31 505 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 GABARAPL1Q9H0R8 117 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 OR6C3Q9NZP0 311 aa10.74□□□□□ -0.69
SS18-204ENST00000539244 ZMAT5Q9UDW3 170 aaKnown RBP10.74□□□□□ -0.69
SS18-204ENST00000539244 G3V2T6 193 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 H0YHG0 523 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 SLC33A1O00400 549 aaPredicted RBP10.73□□□□□ -0.69
SS18-204ENST00000539244 FGF16O43320 207 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 APOL3O95236 402 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 OR3A4PP47883 348 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 ZNF85Q03923 595 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 KRBOX4Q5JUW0 171 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 UTF1Q5T230 341 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 FDX2Q6P4F2 183 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 FAM220AQ7Z4H9 259 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 ZNF329Q86UD4 541 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 COMMD1Q8N668 190 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 C5orf56Q8N8D9 126 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 OR2G2Q8NGZ5 317 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 RPEQ96AT9 228 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 FGGYQ96C11 551 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 NCOR1P1Q9H4R4 102 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 LINC00574Q9H8X3 128 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 GNG8Q9UK08 70 aa10.73□□□□□ -0.69
SS18-204ENST00000539244 AMMECR1Q9Y4X0 333 aaPredicted RBP10.73□□□□□ -0.69
SS18-204ENST00000539244 KBTBD11-OT1A0A1B0GTJ5 212 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 A0A1W2PPI3 338 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 GYG2O15488 501 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 SNRNP70P08621 437 aaKnown RBP10.72□□□□□ -0.69
SS18-204ENST00000539244 NHLRC4P0CG21 123 aaPredicted RBP10.72□□□□□ -0.69
SS18-204ENST00000539244 ZNF44P15621 663 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 ZNF20P17024 532 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 RBM39Q14498 530 aaKnown RBP10.72□□□□□ -0.69
SS18-204ENST00000539244 CDK5R1Q15078 307 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 ATP6AP1Q15904 470 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 TP53I3Q53FA7 332 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 UNQ9370/PRO34162Q6UXP9 181 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 C18orf65Q6ZTR6 163 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 C8orf86Q6ZUL3 223 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 KCTD20Q7Z5Y7 419 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 OR51T1Q8NGJ9 327 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 OR8J1Q8NGP2 316 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 OR56B4Q8NH76 319 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 TOMM40LQ969M1 308 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 PPIL3Q9H2H8 161 aaKnown RBP10.72□□□□□ -0.69
SS18-204ENST00000539244 FRRS1LQ9P0K9 344 aa10.72□□□□□ -0.69
SS18-204ENST00000539244 J3QR06 171 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 RAMP3O60896 148 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 IGHG2P01859 326 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 CCDC159P0C7I6 412 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 ATP6V1E1P36543 226 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 CCR9P51686 369 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 GP2P55259 537 aaKnown RBP10.71□□□□□ -0.69
SS18-204ENST00000539244 NANOS3P60323 173 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms