RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PAX2Q02962 417 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 FOXL1Q12952 345 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 TMEM144Q7Z5S9 345 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 OR5AR1Q8NGP9 310 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 DNAJA3Q96EY1 480 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 ST6GALNAC5Q9BVH7 336 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 TMEM59Q9BXS4 323 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 C6orf106Q9H6K1 298 aaPredicted RBP10.83□□□□□ -0.68
USP3-203ENST00000538686 B9D1Q9UPM9 204 aa10.83□□□□□ -0.68
USP3-203ENST00000538686 MRPS28Q9Y2Q9 187 aaKnown RBP10.83□□□□□ -0.68
USP3-203ENST00000538686 A0A0U1RQK1 487 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 FAM24AA6NFZ4 105 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 LRRC3CA6NJW4 275 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 TNFRSF10CO14798 259 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 BNIP3LO60238 219 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 IFNA5P01569 189 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 HMGA1P17096 107 aaKnown RBP10.82□□□□□ -0.68
USP3-203ENST00000538686 PIGPP57054 158 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 EXOSC7Q15024 291 aaKnown RBP10.82□□□□□ -0.68
USP3-203ENST00000538686 ABCA11PQ4W5N1 156 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 RAET1LQ5VY80 246 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.82□□□□□ -0.68
USP3-203ENST00000538686 C7orf61Q8IZ16 206 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 TMEM252Q8N6L7 170 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 OR52M1Q8NGK5 317 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 OR5D14Q8NGL3 314 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 TMEM171Q8WVE6 324 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 C11orf40Q8WZ69 217 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 ARRDC3Q96B67 414 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 NICN1Q9BSH3 213 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 PARLQ9H300 379 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 LRIT1Q9P2V4 623 aa10.82□□□□□ -0.68
USP3-203ENST00000538686 A0A0A6YYD4 124 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 GAGE12BA1L429 117 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 ZNF891A8MT65 544 aaPredicted RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 NPIPB7O75200 414 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 SRSF10O75494 262 aaKnown RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 VAMP5O95183 116 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 HLA-DQA2P01906 255 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 REG1AP05451 166 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 CRISP2P16562 243 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 DYNLT3P51808 116 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 MEF2BQ02080 365 aaPredicted RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 Q0VG73 95 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 MEX3BQ6ZN04 569 aaKnown RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 LYZL2Q7Z4W2 148 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 BATF2Q8N1L9 274 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 MUC15Q8N387 334 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 ADIPOR1Q96A54 375 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 ZNF48Q96MX3 618 aaPredicted RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 PSG11Q9UQ72 335 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 DOCK3Q8IZD9 2030 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 KIAA1549LQ6ZVL6 1849 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 TRAV9-1A0A075B6T8 112 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 A0A1W2PPV9 198 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 SOCS1O15524 211 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 OR7C2O60412 319 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 ZNF253O75346 499 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 RAD51DO75771 328 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 MPIG6BO95866 241 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 PNMTP11086 282 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 GLB1P16278 677 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 CST5P28325 142 aaPredicted RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 ZNF93P35789 620 aaPredicted RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 RPS27P42677 84 aaKnown RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 RIPPLY3P57055 190 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 PRDX1Q06830 199 aaKnown RBP10.81□□□□□ -0.68
USP3-203ENST00000538686 PMCHL1Q16048 86 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 RNF44Q7L0R7 432 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 OR52N5Q8NH56 324 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 WBP2Q969T9 261 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 PPP1R14AQ96A00 147 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 C8orf44Q96CB5 159 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 FBXO34Q9NWN3 711 aa10.81□□□□□ -0.68
USP3-203ENST00000538686 RBFOX2O43251 390 aaKnown RBP eCLIP10.8□□□□□ -0.689e-6■□□□□ 10.4
USP3-203ENST00000538686 LATO43561 262 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 SERF1AO75920 110 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 NRASP01111 189 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 KRASP01116 189 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 ADMP35318 185 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 NKX2-1P43699 371 aaPredicted RBP10.8□□□□□ -0.68
USP3-203ENST00000538686 TMEM50BP56557 158 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 KRTDAPP60985 99 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 VGLL4Q14135 290 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 CNN3Q15417 329 aaKnown RBP10.8□□□□□ -0.68
USP3-203ENST00000538686 KRTCAP3Q53RY4 240 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 Q5PR19 223 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 FHL5Q5TD97 284 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 Q8N976 141 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 PSMF1Q92530 271 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 ARHGAP5-AS1Q96IT6 56 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 TSPAN32Q96QS1 320 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 PSMG3Q9BT73 122 aaPredicted RBP10.8□□□□□ -0.68
USP3-203ENST00000538686 NKX2-4Q9H2Z4 354 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 CHODLQ9H9P2 273 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 RFNGQ9Y644 331 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 C4orf51C9J302 202 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 ZNF878C9JN71 531 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 G3V4G9 280 aa10.8□□□□□ -0.68
USP3-203ENST00000538686 GYPAP02724 150 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms